RNA id: TU34062


Basic Information

Item Value
RNA id TU34062
length 224
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G30091
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9244824 ~ 9245047 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCTCTGCTCCCAGTCAACCAGTGATGGTGTTCAAGAGAGACACCAAAGGCATTTGATTTTTTTTTGTAGAGAGACTTGTGTGTTCATTTTTGTGTGTAAACAACACTACGGACTTTGATTTCACCTCAAAGCTGCTGTAAACACACACTCCTTTTACCCGCACAAACAGATGAAGACCATAACGTTTCTCTTCTTCAGCTCCGTGATGCTCTCCGGGTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34050 lncRNA downstream 3858 9224449 ~ 9240966 (-) True G30079
TU34020 lncRNA downstream 31309 9212091 ~ 9213515 (-) True G30050
TU34016 lncRNA downstream 55440 9173367 ~ 9189384 (-) True G30048
TU34017 lncRNA downstream 55440 9172680 ~ 9189384 (-) False G30048
TU34009 lncRNA downstream 87164 9157445 ~ 9157660 (-) True G30041
TU34063 lncRNA upstream 704 9245751 ~ 9245958 (-) True G30092
TU34067 lncRNA upstream 5720 9250767 ~ 9250985 (-) True G30096
TU34072 lncRNA upstream 12003 9257050 ~ 9257316 (-) True G30101
TU34079 lncRNA upstream 17581 9262628 ~ 9262835 (-) True G30108
TU34258 lncRNA upstream 29452 9274499 ~ 9274752 (-) True G30272
CI01000004_09179343_09182737.mRNA mRNA downstream 61106 9177975 ~ 9183718 (-) True CI01000004_09179343_09182737
CI01000004_09159241_09169070.mRNA mRNA downstream 73107 9158475 ~ 9171717 (-) False CI01000004_09159241_09169070
CI01000004_09006723_09020870.mRNA mRNA downstream 223954 9006723 ~ 9020870 (-) True CI01000004_09006723_09020870
CI01000004_08958415_08969605.mRNA mRNA downstream 275219 8958279 ~ 8969605 (-) True CI01000004_08958415_08969605
CI01000004_08953993_08957525.mRNA mRNA downstream 287299 8953852 ~ 8957525 (-) True CI01000004_08953993_08957525
CI01000004_09324170_09327754.mRNA mRNA upstream 78499 9323546 ~ 9327754 (-) True CI01000004_09324170_09327754
CI01000004_09329111_09337596.mRNA mRNA upstream 83939 9328986 ~ 9337596 (-) True CI01000004_09329111_09337596
CI01000004_09367511_09370243.mRNA mRNA upstream 122414 9367461 ~ 9370243 (-) True CI01000004_09367511_09370243
CI01000004_09425074_09426973.mRNA mRNA upstream 179920 9424967 ~ 9428395 (-) True CI01000004_09425074_09426973
CI01000004_09486618_09488654.mRNA mRNA upstream 241310 9486357 ~ 9488654 (-) True CI01000004_09486618_09488654
TU33669 other downstream 886697 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 886697 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 1279324 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 2612917 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 2699252 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 132890 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 1501390 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 2162418 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 2531472 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 3131121 12376168 ~ 12384780 (-) True G32207

Expression Profile