RNA id: TU34079


Basic Information

Item Value
RNA id TU34079
length 208
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G30108
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9262628 ~ 9262835 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCCCTAGCTGCCTTAGCATTGCCTCCAGTGACAAAGTTTCCCTTCTAATTGGTACAGGGTGGGAGGAAAATTTGCAAGTTGTCCAAACATCTGCTTGAAAACAACAGGATCAATATCATTTGTGTAAAAAACAAAACAACATACAGTTAATAGCTGTATTCACATACACTGTAAAAAGTAATACGCTACATACACTGTAAAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34072 lncRNA downstream 5312 9257050 ~ 9257316 (-) True G30101
TU34067 lncRNA downstream 11643 9250767 ~ 9250985 (-) True G30096
TU34063 lncRNA downstream 16670 9245751 ~ 9245958 (-) True G30092
TU34062 lncRNA downstream 17581 9244824 ~ 9245047 (-) True G30091
TU34050 lncRNA downstream 21662 9224449 ~ 9240966 (-) True G30079
TU34258 lncRNA upstream 11664 9274499 ~ 9274752 (-) True G30272
TU34262 lncRNA upstream 16885 9279720 ~ 9279930 (-) True G30276
TU34266 lncRNA upstream 42555 9305390 ~ 9305624 (-) True G30280
TU34308 lncRNA upstream 115102 9377937 ~ 9378476 (-) False G30316
TU34362 lncRNA upstream 395089 9657924 ~ 9658522 (-) True G30369
CI01000004_09179343_09182737.mRNA mRNA downstream 78910 9177975 ~ 9183718 (-) True CI01000004_09179343_09182737
CI01000004_09159241_09169070.mRNA mRNA downstream 90911 9158475 ~ 9171717 (-) False CI01000004_09159241_09169070
CI01000004_09006723_09020870.mRNA mRNA downstream 241758 9006723 ~ 9020870 (-) True CI01000004_09006723_09020870
CI01000004_08958415_08969605.mRNA mRNA downstream 293023 8958279 ~ 8969605 (-) True CI01000004_08958415_08969605
CI01000004_08953993_08957525.mRNA mRNA downstream 305103 8953852 ~ 8957525 (-) True CI01000004_08953993_08957525
CI01000004_09324170_09327754.mRNA mRNA upstream 60711 9323546 ~ 9327754 (-) True CI01000004_09324170_09327754
CI01000004_09329111_09337596.mRNA mRNA upstream 66151 9328986 ~ 9337596 (-) True CI01000004_09329111_09337596
CI01000004_09367511_09370243.mRNA mRNA upstream 104626 9367461 ~ 9370243 (-) True CI01000004_09367511_09370243
CI01000004_09425074_09426973.mRNA mRNA upstream 162132 9424967 ~ 9428395 (-) True CI01000004_09425074_09426973
CI01000004_09486618_09488654.mRNA mRNA upstream 223522 9486357 ~ 9488654 (-) True CI01000004_09486618_09488654
TU33669 other downstream 904501 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 904501 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 1297128 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 2630721 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 2717056 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 115102 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 1483602 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 2144630 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 2513684 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 3113333 12376168 ~ 12384780 (-) True G32207

Expression Profile