RNA id: TU35003


Basic Information

Item Value
RNA id TU35003
length 253
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G30937
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9999822 ~ 10000074 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTACCTCATTTGTTTCAATATATATCCTGGTTTTAAATTCAGCTTCCTTGGGAAGAAATACCTTATTTTTCAGCAAGGAAGTAAATTATTTTCTGTGTATGTGTGAGACTTCTTCATTAGCTGCAGCACATTGTGGCACCTCTCGTCTGGTGTGCGACCGGCTGAACAAAGTGGAGAAAATGATGTTAGCGCTATCATAATAAATACCAGTTTGCAACATCAAGCATTTTTTCATTTTTTTTTTTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35002 lncRNA downstream 1185 9993781 ~ 9998637 (-) True G30936
TU34653 lncRNA downstream 28091 9971431 ~ 9971731 (-) True G30652
TU34648 lncRNA downstream 33990 9965560 ~ 9965832 (-) True G30647
TU34610 lncRNA downstream 93419 9906192 ~ 9906403 (-) True G30609
TU34601 lncRNA downstream 102422 9897136 ~ 9897400 (-) True G30600
TU35019 lncRNA upstream 63055 10063129 ~ 10069703 (-) True G30952
TU35044 lncRNA upstream 137209 10137283 ~ 10137647 (-) True G30970
TU35058 lncRNA upstream 162887 10162961 ~ 10169883 (-) True G30981
TU35072 lncRNA upstream 184019 10184093 ~ 10197155 (-) False G30986
TU35074 lncRNA upstream 196360 10196434 ~ 10205019 (-) True G30986
CI01000004_09779903_09780536.mRNA mRNA downstream 218944 9779235 ~ 9780878 (-) True CI01000004_09779903_09780536
CI01000004_09754664_09774588.mRNA mRNA downstream 224749 9753467 ~ 9775073 (-) True CI01000004_09754664_09774588
CI01000004_09703159_09711600.mRNA mRNA downstream 287824 9701926 ~ 9711998 (-) True CI01000004_09703159_09711600
CI01000004_09639469_09656035.mRNA mRNA downstream 343787 9638825 ~ 9656035 (-) True CI01000004_09639469_09656035
CI01000004_09616639_09622200.mRNA mRNA downstream 377162 9616639 ~ 9622660 (-) True CI01000004_09616639_09622200
CI01000004_10271350_10272027.mRNA mRNA upstream 271124 10271198 ~ 10272206 (-) True CI01000004_10271350_10272027
CI01000004_10290550_10295288.mRNA mRNA upstream 289789 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10436514_10438365.mRNA mRNA upstream 436425 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10458668_10465442.mRNA mRNA upstream 458588 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10553379_10573352.mRNA mRNA upstream 552963 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
TU34309 other downstream 592901 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 1641695 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 1641695 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2034322 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 3367915 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 746363 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 1407391 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1776445 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 2376094 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 4550726 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile