RNA id: TU35151


Basic Information

Item Value
RNA id TU35151
length 451
lncRNA type intronic
GC content 0.49
exon number 2
gene id G31056
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10385299 ~ 10385770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTGGCTCCTAAACTCTGGAATAGCCTTCCTGAAAATGTTCGGGGCTCAGACTCGCTCACCCAGTTTAAATCTAGATTAAAGACACATCTCTTCAGCCAAGCATTCACATAATCCATCTCATATCAGATCAATTGCACATGACTATCTTTGCTTAATGTTATGAACAGCAGCTATGCTAATTATTCTCCATTTGCTTTTCTGTTTTACCTCGGGACGCCTGTCTCAGTTTCAGTTTGGATCCAGCCTCTTAAGAAGACCTCAGATGACTAAAACTTTGGAAGAGACGGCGCCAACTCCTGCGATGACTTCAGAAGATGCAACATCTGGATCAACACGCACATTCACATTCTATAAATCCTAATTATTGTTAATATGTAATTCATTTTTCCAGGAGCTCTTTGCTTCTACCTCCAATTAAATTGCTAACAGTGATTGTATGTTAATCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35137 lncRNA downstream 14067 10354479 ~ 10371232 (-) True G31042
TU35141 lncRNA downstream 25508 10359551 ~ 10359791 (-) True G31046
TU35109 lncRNA downstream 99125 10285210 ~ 10286174 (-) True G31014
TU35074 lncRNA downstream 180280 10196434 ~ 10205019 (-) True G30986
TU35072 lncRNA downstream 188144 10184093 ~ 10197155 (-) False G30986
TU35156 lncRNA upstream 7556 10393326 ~ 10426345 (-) True G31060
TU35166 lncRNA upstream 24359 10410129 ~ 10410917 (-) True G31070
TU35178 lncRNA upstream 48384 10434154 ~ 10434962 (-) False G31077
TU35173 lncRNA upstream 48545 10434315 ~ 10434962 (-) False G31077
TU35177 lncRNA upstream 48545 10434315 ~ 10435487 (-) False G31077
CI01000004_10290550_10295288.mRNA mRNA downstream 89942 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10271350_10272027.mRNA mRNA downstream 113093 10271198 ~ 10272206 (-) True CI01000004_10271350_10272027
CI01000004_09779903_09780536.mRNA mRNA downstream 604421 9779235 ~ 9780878 (-) True CI01000004_09779903_09780536
CI01000004_09754664_09774588.mRNA mRNA downstream 610226 9753467 ~ 9775073 (-) True CI01000004_09754664_09774588
CI01000004_09703159_09711600.mRNA mRNA downstream 673301 9701926 ~ 9711998 (-) True CI01000004_09703159_09711600
CI01000004_10436514_10438365.mRNA mRNA upstream 50729 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10458668_10465442.mRNA mRNA upstream 72892 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10553379_10573352.mRNA mRNA upstream 167267 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10619819_10627261.mRNA mRNA upstream 233249 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10692864_10704094.mRNA mRNA upstream 306867 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
TU34309 other downstream 978378 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2027172 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2027172 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2419799 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 3753392 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 360667 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 1021695 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1390749 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1990398 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 4165030 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile