RNA id: TU35166


Basic Information

Item Value
RNA id TU35166
length 351
lncRNA type intronic
GC content 0.40
exon number 2
gene id G31070
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10410129 ~ 10410917 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCAATGCTAATCAGCCAAATCTTTGCCCCTTGATTTTAACATATCACTTTGTATTTTCAGAAAGTGTCATTTTCAGGTATTAATTATTGTCCATATCACTGCAGTATCACATAGACAGCAACTTCATGAAGGAACCTCTTAATTTTTCCCTGGTAGCAATGAACCAACCAGAGGCATTCGTAATACAGACATGTTCACAAGTCCCTAAAGGCCAAGTCAATTCTCAAGTCTTTGAGGTCCAAGTCAAGTCTCAAGTCTTTGAGGTCCAAGTCAAGTCTCAAGTCTTTGAGGTCCAAGTCAAGTCTCAAGTCTTTGAGGTCCAAGTCAAGTAGCAATGAACCAACCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35151 lncRNA downstream 24359 10385299 ~ 10385770 (-) True G31056
TU35137 lncRNA downstream 38897 10354479 ~ 10371232 (-) True G31042
TU35141 lncRNA downstream 50338 10359551 ~ 10359791 (-) True G31046
TU35109 lncRNA downstream 123955 10285210 ~ 10286174 (-) True G31014
TU35074 lncRNA downstream 205110 10196434 ~ 10205019 (-) True G30986
TU35178 lncRNA upstream 23237 10434154 ~ 10434962 (-) False G31077
TU35173 lncRNA upstream 23398 10434315 ~ 10434962 (-) False G31077
TU35177 lncRNA upstream 23398 10434315 ~ 10435487 (-) False G31077
TU35175 lncRNA upstream 24173 10435090 ~ 10435487 (-) False G31077
TU35176 lncRNA upstream 24173 10435090 ~ 10435536 (-) True G31077
CI01000004_10290550_10295288.mRNA mRNA downstream 114772 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10271350_10272027.mRNA mRNA downstream 137923 10271198 ~ 10272206 (-) True CI01000004_10271350_10272027
CI01000004_09779903_09780536.mRNA mRNA downstream 629251 9779235 ~ 9780878 (-) True CI01000004_09779903_09780536
CI01000004_09754664_09774588.mRNA mRNA downstream 635056 9753467 ~ 9775073 (-) True CI01000004_09754664_09774588
CI01000004_09703159_09711600.mRNA mRNA downstream 698131 9701926 ~ 9711998 (-) True CI01000004_09703159_09711600
CI01000004_10436514_10438365.mRNA mRNA upstream 25582 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10458668_10465442.mRNA mRNA upstream 47745 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10553379_10573352.mRNA mRNA upstream 142120 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10619819_10627261.mRNA mRNA upstream 208102 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10692864_10704094.mRNA mRNA upstream 281720 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
TU34309 other downstream 1003208 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2052002 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2052002 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2444629 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 3778222 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 335520 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 996548 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1365602 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1965251 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 4139883 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile