RNA id: TU35193


Basic Information

Item Value
RNA id TU35193
length 1956
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G31089
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10456380 ~ 10458603 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCACAGCTGAGGATATCTAGCATCAAGCTGACATTGTAGCATGTTGATTTGGTAAAACATTTGGCGAATGGACGTGGGGCAGTGTATATTTGTATTGATATAGTGTTGTTTATTTAGTGTTTTATCTTTTGTGCAGTAAAGATGAAATGTGTGTGAAGTAGCACTGCGTGGTGTTAAGATTGGGGCCATGCCAGAGTTTATATTATTGCACTACAGTAAGAAACCATGTGGTCCGAGTGCTTTGTTGTGCATTTTGAATACGCTGTAAGTTGGACTGCTGCCTTGCATTCATAAGTCCTGAGCTCGAATGTCAGCCTATTGCTTTATTTTACTACCAAAACCTTTAAATCCAATATTAATTCATTTAAAATAATTTCAAAATGCAGAATTGTTCATTTATATACTTAAAATACAGACAAAATGTGGTTAGCAAGTATCATTTTACACAGCATCTGCAGTTGATTGCGAGGAACAAAATGCACCAAGTTTGCCACACAATGGCTGGAATTAAAATATGAACACAGAGGACAACGTAAAAAGAGTGTGAAAGACTCTATGGTACTCAGCCATTGAATCCGGCCACACAGAATCTAGGAGGTTAAAAGTCTCCCTCTGGCCTTGCAGGGTTGCTGGGAGACAAGCAGCAAGGGTCCTGTCAAAGCTGGCATAATTTACCCTGCAATCAAACGCTCATATTAGCACAGCTCTTCAGCAGAGTAAAGAAGAGTATGCTTACAGATGTTTATTGATGTCACTTGTTGCTTGATAGTTTATTTATTTAGTTATTTTAAATATGCTCATAAAAATCATCTGGTTTGTTACAAGACCATACTTACCACTGAAAATTAAATAATTAAATAAAGATTGATTTTTGACGTATTTTACTTCATAAATGCATAGAAGAAATAATTGGTATTGGTCTCTTTTTTATGTAATGTTTATTTAACCAGGAAAATGTAACAACATTAAGTGTAGCAGGGACATGAAATAAAAAAAATAAATAAAAAAAAACCTGTGAGGATTTTGCCGCATCATTTTAAAACATCACCGCATGCCATATACAGTTTATATATAAATAAATGAGTACACCCTCTCTGAAACTTCTGAAAGTCAGCAATTACTCAATTACTTAGAAGACATGTTAGGGTTCTTTAGAGATATAATGTTCCAGCAAGTCTGCTTAATCAATTACCAAAGAAGAATGGTGTAAGTTTAAGGCAATGTTTGATCAACAGGTAAGTATGTTGAACCAAAATAATTAAAAAAAAAAGTAATTTCTTGACAATTCAAAGTGTTATATATCCCACTGAATCATTCTCAGACTTAATGCTGACAACAATGGAACCACTTGGGAGAGAACTGTCAGGAGACTTATTTCTTAGCACAAAAGAGGACAGTGGTACAAGAGGATTACCAAATCATTGTTTTAATTGTGAAAATATAGCAAAAGTAACACAGAAATTCAAAAACAATGGACTTGTGACAAGGCCCCTGAAATAATCAGGCCTTCATTTTAAGCTTTCATTTAGTGATTTTTTTTGCTAGACAAAGAGCAGGAGAAATACCAAGCGAGTGTCTCAGAGCCAGCAAAAGCTATGAAAAGAGTGACTGTTTATCTCACAGAGTAAGATGCAGCCTGCAGAAATGACATGCATGGTTGTTGTTCTCACTGGAACTACCTACTGTAGCCAAAGCACAATAAAGTCAGTTAGCCATTTCCAAAGCCCATATTTACAAAATATAGATTCTGGGAATCAGTACTCTGGTCTCATGAGACCAAATCAATCATTTTGAATCTAACAGCATCCAAAATGTTATGGTGTTGCTAGAGGAGGAGTACAGTGAGAAGTGCCTGGTTCCCACAGTAAAGTTCAGTGGTAGTAAAGCTCTTATATAGGGATGTATGAGTGCTGAAGGTGTGAGGGAGTTGTGCTTTATCAATGCTGTCATGAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35176 lncRNA downstream 20844 10435090 ~ 10435536 (-) True G31077
TU35177 lncRNA downstream 20893 10434315 ~ 10435487 (-) False G31077
TU35175 lncRNA downstream 20893 10435090 ~ 10435487 (-) False G31077
TU35178 lncRNA downstream 21418 10434154 ~ 10434962 (-) False G31077
TU35173 lncRNA downstream 21418 10434315 ~ 10434962 (-) False G31077
TU35210 lncRNA upstream 22214 10480817 ~ 10481122 (-) True G31105
TU35245 lncRNA upstream 83346 10541949 ~ 10542189 (-) True G31140
TU35240 lncRNA upstream 86031 10544634 ~ 10550641 (-) True G31135
TU35244 lncRNA upstream 151680 10610283 ~ 10611074 (-) True G31139
TU35247 lncRNA upstream 153216 10611819 ~ 10613648 (-) True G31142
CI01000004_10436514_10438365.mRNA mRNA downstream 16921 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10290550_10295288.mRNA mRNA downstream 161023 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10271350_10272027.mRNA mRNA downstream 184174 10271198 ~ 10272206 (-) True CI01000004_10271350_10272027
CI01000004_09779903_09780536.mRNA mRNA downstream 675502 9779235 ~ 9780878 (-) True CI01000004_09779903_09780536
CI01000004_09754664_09774588.mRNA mRNA downstream 681307 9753467 ~ 9775073 (-) True CI01000004_09754664_09774588
CI01000004_10458668_10465442.mRNA mRNA upstream 59 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10553379_10573352.mRNA mRNA upstream 94434 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10619819_10627261.mRNA mRNA upstream 160416 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10692864_10704094.mRNA mRNA upstream 234034 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10757852_10760211.mRNA mRNA upstream 298940 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
TU34309 other downstream 1049459 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2098253 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2098253 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2490880 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 3824473 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 287834 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 948862 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1317916 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1917565 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 4092197 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile