RNA id: TU35247



Basic Information


Item Value
RNA id TU35247
length 1830
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G31142
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10611819 ~ 10613648 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCAGATAAAACATTTATTTTAAATCACAGTTGCCTGAATGCAGCAGGAAAAATCTTTGGACTTCAGCATGGATTAAACACGTTCACATGTGGCTCAACGTCAAGTGTCAATCAAATCGCTCCCCCTTTTTAAATAAAGAAGCGTCCTTTTCCTCGCGCACTATATCTGAAGTTTCAGTCAGTGTACAGCAGTGATATTAATTGAAAAGGTTTTACACCACCGTACACATAAAGTATATATACATATAATATTGCAGAAACATATCTCATACATATAGTTTTCATCCGTTTAATGCTGGTATTTTGTACACTGGCCCTTTTTTAAAATTATTGCATTTTAGATGTCCTGTCCTTCACGTTAATCACTGTCTGATTTGTCGTCCTTTGTTGTTGTGGCGTGATTGTATAGTCCCTGTGCCATCAGGTGTAATGCAAGTGTGTTTTTGCTCCCCGAAGCTTTTTTAATCTTCGCTCTTTTGTTCTGAAACCAGATTTTGATTTGAGACTCGTTGAGGCCGAGTTCTTGGGCCAAAGCTTGCCTCCTTTGCTCCGTCAGGTAACGGTTATTCTGGAATTCATTCTTGAGTCTCTGGAGTTGCTCCGCTGTGAAGGCTGTTCTTGGCCGCTTGTCTTCCTTGGTTGGATTTTTCTTCTTTGGTTTGCGGGATCTTGGTCCTGCATTTCAGAATATAATGAAAGAGATTAGGCCTACGTTTTGCTCGTGCCGTAAAATGCACATAGGCTATTAATGTTGTATTTAGTAGCTATTATTAATAGTATTTGCCTGGTAATAATAACAATACAACAATGTCGTCTAATAATAAAGTGTTGTTTCTTTAAAGTTACTCTAGCCTAATTGGAGCAAGTATAGCCTGTTCTTTCACATCGAATGTTTCAAGGAGTCTGTTCTAGTTTTTACTATGGAAGCATGGTGTAGTGGTGTGGGTGGGGGTGGGGGTGGGGTGACTGCCAGAAAGGGAGGGGTGAAAGAGGCTTTTCCCTCTCTCTGTTACCATAGGAACTACATTTATAAGATAACGTTTTTTTTAACTTGCTCTAAGAGTAGCACCTGTCGTTTAATGGAAGTATAGCTTTCCCACTCCATATTCTATTTTTAGTTCATTCTTAGATAGGTTACTACTCCAATACACCCAAAGGTTCCGCGTGGCATGAATGCTGACAATAGATTGATCTGCAGCCTATGAGATGAGCCCTCGCTCGCACCCTATTTTTGCACCTTTTATTTAGCTTAAGCTGGTTTCTATAGCGACTCTTATGATATAATATTAATCTTTTCATGTCGTATAATCGAAAAATCAATTTAAGTACCCTAAGCATTACACGTAGCGTACTCGCAACATGACAAGGGGGTTATCGACTACACCTTTTAAGTTAGTGTGACCTGTCCTAATATTCATTAGTAGCCTAAGTATGTGTAGTCGGTTTCATTGTGTAAAAACTTTGGTGAAATTGTTTTCACGGACTTTATATTAGAAATGGGGTTACGATTATTTGCCAAATTATTCTAGAACGTATTAATCAGAGAAGTTTCAACGTGACAAAAACTTGCATAGCCACTTTTTCGGAAGGCCGTGTTGTGCGCCATTTGAACTTCATTTGAAATTGGTTGATAATTCGATTGTTTAAAAATTTATTATAGTCTAAAATCGTACGAAATTTGGTTGTCTTATATCGGTTAGTGCGGTAATAATAATTTTATTTCAGGAGCTATTTTTGAAGAGATCTGGTTTAGCATTTAGCTTCCGTGGTGCGTCCAACTCCATTGTCAAAAATATGCTAATTAAATATCAACAAAGACTTCGAAGTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35244 lncRNA downstream 745 10610283 ~ 10611074 (-) True G31139
TU35240 lncRNA downstream 61178 10544634 ~ 10550641 (-) True G31135
TU35245 lncRNA downstream 69630 10541949 ~ 10542189 (-) True G31140
TU35210 lncRNA downstream 130697 10480817 ~ 10481122 (-) True G31105
TU35193 lncRNA downstream 153216 10456380 ~ 10458603 (-) True G31089
TU35279 lncRNA upstream 16296 10629944 ~ 10631721 (-) True G31172
TU35280 lncRNA upstream 22522 10636170 ~ 10636383 (-) True G31173
TU35283 lncRNA upstream 31178 10644826 ~ 10653508 (-) True G31176
TU35287 lncRNA upstream 40042 10653690 ~ 10653939 (-) True G31179
TU35292 lncRNA upstream 51136 10664784 ~ 10665159 (-) True G31184
CI01000004_10553379_10573352.mRNA mRNA downstream 36576 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10458668_10465442.mRNA mRNA downstream 146116 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10436514_10438365.mRNA mRNA downstream 172360 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10290550_10295288.mRNA mRNA downstream 316462 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10271350_10272027.mRNA mRNA downstream 339613 10271198 ~ 10272206 (-) True CI01000004_10271350_10272027
CI01000004_10619819_10627261.mRNA mRNA upstream 5371 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10692864_10704094.mRNA mRNA upstream 78989 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10757852_10760211.mRNA mRNA upstream 143895 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10766385_10766860.mRNA mRNA upstream 152692 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10788659_10809214.mRNA mRNA upstream 175011 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
TU34309 other downstream 1204898 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2253692 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2253692 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2646319 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 3979912 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 132789 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 793817 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1162871 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1762520 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3937152 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile