RNA id: TU35279


Basic Information

Item Value
RNA id TU35279
length 354
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G31172
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10629944 ~ 10631721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGAAATTCATCTCCAGAGGGAGCATTGATTTCGATGTCTAAAACTTCACCAGGGTCCACCTCTGTCTGCTCTTCTTTAGGACATCTGGCTTGGTCTTCAGCAAGGTGTGGAGTTTTGCACACAAGGTATGGCTTTGCAATCGCCTGAACTTTTGGTTTAGAAACACTTTCATCTTGACATCTCATAGTTTCGTTCTCATCATCACTACGCAAAAGGTCATCGTTCAGCTCTTCATCTGATGTGTCCAAGAGATCTTGTTTGGATGTCAGCCAGTCATCCACAAGAATGTCTTCCTCTGAATTACTGTTCATTTCTTGAATTTGATACTTCCCTCTGAAGGTCCTCTCTTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35247 lncRNA downstream 16296 10611819 ~ 10613648 (-) True G31142
TU35244 lncRNA downstream 18870 10610283 ~ 10611074 (-) True G31139
TU35240 lncRNA downstream 79303 10544634 ~ 10550641 (-) True G31135
TU35245 lncRNA downstream 87755 10541949 ~ 10542189 (-) True G31140
TU35210 lncRNA downstream 148822 10480817 ~ 10481122 (-) True G31105
TU35280 lncRNA upstream 4449 10636170 ~ 10636383 (-) True G31173
TU35283 lncRNA upstream 13105 10644826 ~ 10653508 (-) True G31176
TU35287 lncRNA upstream 21969 10653690 ~ 10653939 (-) True G31179
TU35292 lncRNA upstream 33063 10664784 ~ 10665159 (-) True G31184
TU35294 lncRNA upstream 35208 10666929 ~ 10667135 (-) True G31186
CI01000004_10619819_10627261.mRNA mRNA downstream 2683 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10553379_10573352.mRNA mRNA downstream 54701 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10458668_10465442.mRNA mRNA downstream 164241 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10436514_10438365.mRNA mRNA downstream 190485 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10290550_10295288.mRNA mRNA downstream 334587 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10692864_10704094.mRNA mRNA upstream 60916 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10757852_10760211.mRNA mRNA upstream 125822 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10766385_10766860.mRNA mRNA upstream 134619 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10788659_10809214.mRNA mRNA upstream 156938 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10847650_10847940.mRNA mRNA upstream 215836 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
TU34309 other downstream 1223023 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2271817 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2271817 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2664444 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 3998037 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 114716 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 775744 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1144798 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1744447 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3919079 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile