RNA id: TU35280


Basic Information

Item Value
RNA id TU35280
length 214
lncRNA type intronic
GC content 0.38
exon number 1
gene id G31173
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10636170 ~ 10636383 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATGACATGGGGTTGAGTAAATGATCAGGAAATTGTAATTCTGGAGTGAACTAATCCTTTAAAAATGCTGCAATAAAATAAACAGTGACAAAACTACATAAACTGCTGAAGAACTTGACCAGCACTGAAAACCTGAGCCACTGCCACACTAACGGTAAGCAATGGCGGTTGTGAAATCTATACATCAAGCATCATATCGAATCCTCCATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35279 lncRNA downstream 4449 10629944 ~ 10631721 (-) True G31172
TU35247 lncRNA downstream 22522 10611819 ~ 10613648 (-) True G31142
TU35244 lncRNA downstream 25096 10610283 ~ 10611074 (-) True G31139
TU35240 lncRNA downstream 85529 10544634 ~ 10550641 (-) True G31135
TU35245 lncRNA downstream 93981 10541949 ~ 10542189 (-) True G31140
TU35283 lncRNA upstream 8443 10644826 ~ 10653508 (-) True G31176
TU35287 lncRNA upstream 17307 10653690 ~ 10653939 (-) True G31179
TU35292 lncRNA upstream 28401 10664784 ~ 10665159 (-) True G31184
TU35294 lncRNA upstream 30546 10666929 ~ 10667135 (-) True G31186
TU35298 lncRNA upstream 34058 10670441 ~ 10670844 (-) True G31190
CI01000004_10619819_10627261.mRNA mRNA downstream 8909 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10553379_10573352.mRNA mRNA downstream 60927 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10458668_10465442.mRNA mRNA downstream 170467 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10436514_10438365.mRNA mRNA downstream 196711 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10290550_10295288.mRNA mRNA downstream 340813 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10692864_10704094.mRNA mRNA upstream 56254 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10757852_10760211.mRNA mRNA upstream 121160 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10766385_10766860.mRNA mRNA upstream 129957 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10788659_10809214.mRNA mRNA upstream 152276 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10847650_10847940.mRNA mRNA upstream 211174 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
TU34309 other downstream 1229249 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2278043 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2278043 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2670670 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 4004263 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 110054 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 771082 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1140136 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1739785 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3914417 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile