RNA id: TU35298


Basic Information

Item Value
RNA id TU35298
length 404
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G31190
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10670441 ~ 10670844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGCTGGGTGACCCTCTGTTTGCTGTGCAGCTTTACATTCCCACAATCCTTCCCATGCGCCATCCTCCACTTTGATACAGCGGCATAGCAACCGTGAGGACTGGCATTTTAGTGACAGACACACAAGAGAGGCAAACACAAGATACAAGAATCTGCTACTGACTATTCTCAGTTCTCTTGCTCCCTCTTTCTCTCTTATACCAGGGTAATTTTTGTTTCTTACACCATTAATTTTCCTAAACGGCATTGCAACCTTTTTTTTTTTTTTTTTTTTACATATGAGTCAGTAATCACTCAGGCAAATCCACAATAATCCATCTCTGAAACTGCCGTTAATAGTTGCACAAGCTTATTTCATTAAAGATCTATTGATTTTTGCTCTCTGCGTAAAATACTGTGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35294 lncRNA downstream 3306 10666929 ~ 10667135 (-) True G31186
TU35292 lncRNA downstream 5282 10664784 ~ 10665159 (-) True G31184
TU35287 lncRNA downstream 16502 10653690 ~ 10653939 (-) True G31179
TU35283 lncRNA downstream 16933 10644826 ~ 10653508 (-) True G31176
TU35280 lncRNA downstream 34058 10636170 ~ 10636383 (-) True G31173
TU35253 lncRNA upstream 5573 10676417 ~ 10681007 (-) True G31148
TU35250 lncRNA upstream 22523 10693367 ~ 10693734 (-) True G31145
TU35243 lncRNA upstream 22983 10693827 ~ 10696909 (-) True CI01000004_10692864_10704094
TU35304 lncRNA upstream 41442 10712286 ~ 10712931 (-) True G31196
TU35308 lncRNA upstream 56068 10726912 ~ 10727142 (-) True G31200
CI01000004_10619819_10627261.mRNA mRNA downstream 43180 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10553379_10573352.mRNA mRNA downstream 95198 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10458668_10465442.mRNA mRNA downstream 204738 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10436514_10438365.mRNA mRNA downstream 230982 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10290550_10295288.mRNA mRNA downstream 375084 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10692864_10704094.mRNA mRNA upstream 21793 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10757852_10760211.mRNA mRNA upstream 86699 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10766385_10766860.mRNA mRNA upstream 95496 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10788659_10809214.mRNA mRNA upstream 117815 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10847650_10847940.mRNA mRNA upstream 176713 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
TU34309 other downstream 1263520 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2312314 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2312314 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2704941 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 4038534 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 75593 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 736621 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1105675 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1705324 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3879956 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile