RNA id: TU35308


Basic Information

Item Value
RNA id TU35308
length 231
lncRNA type intronic
GC content 0.48
exon number 1
gene id G31200
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10726912 ~ 10727142 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTGTCCTGCCATTGTGGATGCCACACATACCCTTATGAAAGAGATGTAATAACACACTTTTACATATTCAGCACATTTTATAAACTTCTTCACGATATTACACCAGAATTGTGTTTGACACATATAAAAGTCATTCAAATTGTTCAAATCTCTTAAAAATACATGATCCACAGAGGAATGGATGATTTAGCTAATTTCACACGATCAGTACTATGACGCAATTTGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35304 lncRNA downstream 13981 10712286 ~ 10712931 (-) True G31196
TU35243 lncRNA downstream 30003 10693827 ~ 10696909 (-) True CI01000004_10692864_10704094
TU35250 lncRNA downstream 33178 10693367 ~ 10693734 (-) True G31145
TU35253 lncRNA downstream 45905 10676417 ~ 10681007 (-) True G31148
TU35298 lncRNA downstream 56068 10670441 ~ 10670844 (-) True G31190
TU35314 lncRNA upstream 23707 10750849 ~ 10752367 (-) True G31204
TU35318 lncRNA upstream 28087 10755229 ~ 10755530 (-) True G31206
TU35331 lncRNA upstream 45183 10772325 ~ 10772526 (-) True G31212
TU35345 lncRNA upstream 91008 10818150 ~ 10818353 (-) True G31224
TU35360 lncRNA upstream 104379 10831521 ~ 10831904 (-) True G31234
CI01000004_10692864_10704094.mRNA mRNA downstream 22818 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10619819_10627261.mRNA mRNA downstream 99651 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10553379_10573352.mRNA mRNA downstream 151669 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10458668_10465442.mRNA mRNA downstream 261209 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10436514_10438365.mRNA mRNA downstream 287453 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10757852_10760211.mRNA mRNA upstream 30401 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10766385_10766860.mRNA mRNA upstream 39198 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10788659_10809214.mRNA mRNA upstream 61517 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10847650_10847940.mRNA mRNA upstream 120415 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
CI01000004_10884499_10886045.mRNA mRNA upstream 157284 10884426 ~ 10886045 (-) True CI01000004_10884499_10886045
TU34309 other downstream 1319991 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2368785 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2368785 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2761412 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 4095005 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 19295 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 680323 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1049377 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1649026 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3823658 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile