RNA id: TU35385


Basic Information

Item Value
RNA id TU35385
length 571
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G31258
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10880295 ~ 10880865 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCCACTGACACATGGCATACGCAGCTCCATAATCAGCCCGAGCGCTGCAGACTCACGCTAAGCTGGCCTTTACAGGCAAGAGGGACAGAAACGTCTCCAGAAGAACCCACGGCCATCTCTACCGGGCATTTAGCTGCATCAGGATATCAACTCTCAGCCTACTGCTTCCTGTGCTGGAGCACGCATAGCCGAAGCAAGATATTAGACAATTGGAATGGAACACACTAGTATGAGAAACTAGATATTGTCTTTGAATTTAGAATGACTTTACTGTAAAGATGATGACAAAATGAAAAGCATGCAAAGCTGCTTGTAAGAGGCAGATAATGTGCTGATGGCACGATGCTTACAGTTGTAGTAATTAAAACATAATTAGGTGTTAGGCTCCTCTGTGCCTCCATTACACCTGGAACAGTACCATCAATCTTCATTACACCCTAAGACACTGTATTAGCCCGCCGAAAAAAACAACAGTACTGATCTTACAATGTTTCTCATATAACATTGTTTTTTTTATGCTGTAATCATTTATTTATTTACACTCTTGTAATAAAAATTATGTATATGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35372 lncRNA downstream 21407 10858515 ~ 10858888 (-) True G31245
TU35370 lncRNA downstream 30661 10849431 ~ 10849634 (-) True G31243
TU35360 lncRNA downstream 48391 10831521 ~ 10831904 (-) True G31234
TU35345 lncRNA downstream 61942 10818150 ~ 10818353 (-) True G31224
TU35331 lncRNA downstream 107769 10772325 ~ 10772526 (-) True G31212
TU35392 lncRNA upstream 8743 10889608 ~ 10889813 (-) True G31265
TU35402 lncRNA upstream 20264 10901129 ~ 10901386 (-) True G31271
TU35619 lncRNA upstream 26457 10907322 ~ 10913522 (-) True G31455
TU35620 lncRNA upstream 36034 10916899 ~ 10919641 (-) True G31456
TU35617 lncRNA upstream 40570 10921435 ~ 10922124 (-) True G31454
CI01000004_10847650_10847940.mRNA mRNA downstream 32300 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
CI01000004_10788659_10809214.mRNA mRNA downstream 70490 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10766385_10766860.mRNA mRNA downstream 113435 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10757852_10760211.mRNA mRNA downstream 119153 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10692864_10704094.mRNA mRNA downstream 176201 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10884499_10886045.mRNA mRNA upstream 3561 10884426 ~ 10886045 (-) True CI01000004_10884499_10886045
CI01000004_10944147_11018487.mRNA mRNA upstream 61512 10942377 ~ 11018487 (-) True CI01000004_10944147_11018487
CI01000004_11043026_11046108.mRNA mRNA upstream 162015 11042880 ~ 11046108 (-) True CI01000004_11043026_11046108
CI01000004_11052319_11059170.mRNA mRNA upstream 170529 11051394 ~ 11059170 (-) True CI01000004_11052319_11059170
CI01000004_11073846_11086948.mRNA mRNA upstream 192814 11073679 ~ 11086948 (-) True CI01000004_11073846_11086948
TU35313 other downstream 129654 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 1473374 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2522168 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2522168 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2914795 7964364 ~ 7965500 (-) True G29656
TU36279 other upstream 526600 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 895654 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1495303 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3669935 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 3687928 14568793 ~ 14569264 (-) True G33746

Expression Profile