RNA id: TU35402


Basic Information

Item Value
RNA id TU35402
length 258
lncRNA type intronic
GC content 0.42
exon number 1
gene id G31271
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10901129 ~ 10901386 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACCACTAGGCTATTGGCATGAACATGCTGGCCTCAGTTTGATAAATATTAGAACCTTATTGAGTAGGATAAATGGGGGGAACAGAATGCAATGGCAAAAATCCAGCTGTCAGAATCCGTTCTCCCATGCCCATGATGAGAGATTTTGGATGTATTGGATTGTAGTGGATGTAGTGGCCTGATGAAGGTCAGTGGACCGAAACGTTGCATATAATAATTTTCTATATTTAGCATGAACTGGTAGTGTGCGGGATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35392 lncRNA downstream 11316 10889608 ~ 10889813 (-) True G31265
TU35385 lncRNA downstream 20264 10880295 ~ 10880865 (-) True G31258
TU35372 lncRNA downstream 42241 10858515 ~ 10858888 (-) True G31245
TU35370 lncRNA downstream 51495 10849431 ~ 10849634 (-) True G31243
TU35360 lncRNA downstream 69225 10831521 ~ 10831904 (-) True G31234
TU35619 lncRNA upstream 5936 10907322 ~ 10913522 (-) True G31455
TU35620 lncRNA upstream 15513 10916899 ~ 10919641 (-) True G31456
TU35617 lncRNA upstream 20049 10921435 ~ 10922124 (-) True G31454
TU35615 lncRNA upstream 24898 10926284 ~ 10928105 (-) True G31452
TU35621 lncRNA upstream 28922 10930308 ~ 10930804 (-) True G31457
CI01000004_10884499_10886045.mRNA mRNA downstream 15084 10884426 ~ 10886045 (-) True CI01000004_10884499_10886045
CI01000004_10847650_10847940.mRNA mRNA downstream 53134 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
CI01000004_10788659_10809214.mRNA mRNA downstream 91324 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10766385_10766860.mRNA mRNA downstream 134269 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10757852_10760211.mRNA mRNA downstream 139987 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10944147_11018487.mRNA mRNA upstream 40991 10942377 ~ 11018487 (-) True CI01000004_10944147_11018487
CI01000004_11043026_11046108.mRNA mRNA upstream 141494 11042880 ~ 11046108 (-) True CI01000004_11043026_11046108
CI01000004_11052319_11059170.mRNA mRNA upstream 150008 11051394 ~ 11059170 (-) True CI01000004_11052319_11059170
CI01000004_11073846_11086948.mRNA mRNA upstream 172293 11073679 ~ 11086948 (-) True CI01000004_11073846_11086948
CI01000004_11172493_11174547.mRNA mRNA upstream 270829 11172215 ~ 11175867 (-) True CI01000004_11172493_11174547
TU35313 other downstream 150488 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 1494208 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2543002 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2543002 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2935629 7964364 ~ 7965500 (-) True G29656
TU36279 other upstream 506079 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 875133 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1474782 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3649414 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 3667407 14568793 ~ 14569264 (-) True G33746

Expression Profile