RNA id: TU36455


Basic Information

Item Value
RNA id TU36455
length 583
RNA type TUCP
GC content 0.46
exon number 3
gene id G32150
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11776519 ~ 11780951 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAATCTACTAAATTTTTATAGTTATATGTTTAAGTGAAGCTCAGTCATGTTAAGGACTGAAACAAAGTTCCATCATGTTATTAATGAGTAAAGCAACAGTGCCCTCTGGTGGAGGGTGGAGGAATATAAAGTAAAAGGCTGCCTACCGCAATGGCCCACCAATGACGCAGTCTACACACTGCATAGGCCAGAATCAAGACTGCAAAGCGGAACACAGCCAAGAGAAATATGTCAAAAAAGGATTTGTGGTAATCATACTGCAACACCTCTTTCGTCAGCTGCTCTTGTATACCTCCACTGACATTGAGCTCAATGATCCACAGCAAGGTGACGAACAAAAGGTCAAAGGTCACAAACAAGCAAAAGGTTCTTCGAACATCAGAGATGCACTTCTTCTCTCCTGCTTCGTAGGACTCGATACGGGAAGAAATGAGGGTGGAGTTGATGTTGCCCACACCCCCTAGAGTGGCCCGGGACCCCACACTGCTGCCACATTGGCTGTCCATGACTCGTCAGTCGTGTCCACTCGTGTCACTCCATTCACACTCACACTTCTGGAGAGTCAGACTCTGTAGTCATGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36370 lncRNA downstream 2750 11771029 ~ 11773769 (-) True G32071
TU36448 lncRNA downstream 27715 11748523 ~ 11748804 (-) True G32147
TU36446 lncRNA downstream 48636 11727615 ~ 11727883 (-) True G32145
TU36444 lncRNA downstream 50444 11725774 ~ 11726075 (-) True G32143
TU36438 lncRNA downstream 68269 11707737 ~ 11708250 (-) True G32137
TU36459 lncRNA upstream 1297 11782248 ~ 11783549 (-) True G32154
TU36468 lncRNA upstream 61701 11842652 ~ 11844262 (-) True G32163
TU36483 lncRNA upstream 111781 11892732 ~ 11892973 (-) True G32174
TU36519 lncRNA upstream 119172 11900123 ~ 11907428 (-) True G32195
TU36546 lncRNA upstream 166712 11947663 ~ 11947956 (-) True G32222
CI01000004_11768937_11770193.mRNA mRNA downstream 6091 11768641 ~ 11770428 (-) True CI01000004_11768937_11770193
CI01000004_11731995_11744636.mRNA mRNA downstream 31883 11731852 ~ 11744636 (-) True CI01000004_11731995_11744636
CI01000004_11720195_11723994.mRNA mRNA downstream 52525 11719788 ~ 11723994 (-) True CI01000004_11720195_11723994
CI01000004_11695427_11698763.mRNA mRNA downstream 77756 11694520 ~ 11698763 (-) True CI01000004_11695427_11698763
CI01000004_11681649_11693474.mRNA mRNA downstream 83045 11681457 ~ 11693474 (-) True CI01000004_11681649_11693474
CI01000004_11789063_11823381.mRNA mRNA upstream 7545 11788496 ~ 11824740 (-) True CI01000004_11789063_11823381
CI01000004_11826038_11848540.mRNA mRNA upstream 43956 11824907 ~ 11848540 (-) True CI01000004_11826038_11848540
CI01000004_11930044_11933982.mRNA mRNA upstream 148889 11929840 ~ 11934156 (-) True CI01000004_11930044_11933982
CI01000004_11944095_11946749.mRNA mRNA upstream 162834 11943785 ~ 11947016 (-) True CI01000004_11944095_11946749
CI01000004_11974708_11980518.mRNA mRNA upstream 193693 11974644 ~ 11982295 (-) True CI01000004_11974708_11980518
TU36279 other downstream 363612 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 1025878 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 2369598 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 3418392 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 3418392 8354498 ~ 8358127 (-) True G29746
TU36531 other upstream 595217 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 2769849 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 2787842 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 2797507 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 2800455 14581406 ~ 14581873 (-) True G33755

Expression Profile