RNA id: TU36468



Basic Information


Item Value
RNA id TU36468
length 1559
lncRNA type intronic
GC content 0.37
exon number 2
gene id G32163
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11842652 ~ 11844262 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTAATCTGTATGTTTAAAGAGACTCTGTGGCTATATAAATGTGTTGTGTGAGTTGAAGGGAAGTTTTTTTTGTGTGTGTGTGTTGTTAAATTAATGCGTTGGATATAGACAGCAATCATGTCGACGATAATTGCAGGACTGATAATGATAGATGTAGTAACGTGCCATAAATAGCTGGTTTGCACAACAGGAGATATCTGCTTTGTCACAAAGATGAGAATGTCTAGAATTAGTCATCAGTTTATTTTAGAGCACAAATGGATTTTTGTTGTAACTGTATATGTATTGATTTACTCTACGTATGTCTGAAATAGAAAGTATTTGTAGCTGTGCTTTGCTAAGCAATATGCGGTGTGTTGCAGTGATATGTATTGGGGACAGTTCACCCAAAAATGAAGATTCTGCCATCATTTACTCCCCCTCATGTCGTTCCAAACCTGTATGACTGTCCATATAATGAAAGTCTTTACTGTGGAACACAAAAGAAGATATTTTGAGTTTATTTTTTTTCATTACATGGACAAAAACAGTTAAAACACAGAAGAGAGTAAGTCATACAGGTTTGAAACGACATGAGGCAGAGTAAATGATGACAGAATTTTTATTTTTGGTGAACTATCCCTTTAACTAATGTAGTTATTATTTTGAGTGTTATTGTAGACAGTATTTATTTTGATTATAGTACAATCAGTGGTATGTATCCTGTGGTCATCTGTATGTTGTGGTGAATATGCTCTGGTAAGCTGTATGCTGTTTTGAGCTGAGAGGGTCTGTCTGCTCACTGAAGCAACAGCCTGGTTACATAATCCATCCAATCGGCAGCCTCCTCTCTGTGCCAGGCCCTCCAGCCACGCTCATTTCAGCTCGGGCCAGAAAGAAAGATACATTTATAACTGTTGCAGGCACAAAAAATGGCCGTTTTACTTTAGATTTGTAGTATTTAGAGTTTTGGGGTTCTTATTGACGTACTGTACAAGCATGGAATGATGCATTTTAGCTTATAGGAGTGACTTGCTGATATGATTCTTTGTTTAATAAGGATTAAAAGAGCTTTAATATCTTGCCGATGTATTAATGTTTGAGGTCCAGAAGTTTGTGTTAGTGCATCATATTTGCCTTTGGATGTTTTTTCACATTTGTAGTACTTTTCATACTTTTTAGACATTCTGACTTAAAGGGATAGTTCACCGAAAAAAGAAAATTATCCCATGATTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTATCTTCTTTCAGACAAACACAATCGGAGATATATTTAAAAAATATCCTGGCTCTTTCATGCTTTATAATGGCAGTGAATGGGGGACCCGATTTTGAAGCCAAAAAAACAAGCTCATCCGTCCATCATAAAAGTAATCCACACGGCTCCAGGGGGTTAATAAAGGCCTTCTGAAGCGAAGCAAAGGGTTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAATCCATATTTAAAACTTCATTCACTATAATAACAAGCTTCTAACAGACGGCTGTACGCATCGGTTTGCGGCGGAAGAGTAACCCCTGACCGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36459 lncRNA downstream 59103 11782248 ~ 11783549 (-) True G32154
TU36452 lncRNA downstream 65563 11776519 ~ 11777089 (-) False G32150
TU36370 lncRNA downstream 68883 11771029 ~ 11773769 (-) True G32071
TU36448 lncRNA downstream 93848 11748523 ~ 11748804 (-) True G32147
TU36446 lncRNA downstream 114769 11727615 ~ 11727883 (-) True G32145
TU36483 lncRNA upstream 48470 11892732 ~ 11892973 (-) True G32174
TU36519 lncRNA upstream 55861 11900123 ~ 11907428 (-) True G32195
TU36546 lncRNA upstream 103401 11947663 ~ 11947956 (-) True G32222
TU36552 lncRNA upstream 106729 11950991 ~ 11951304 (-) True G32224
TU36563 lncRNA upstream 107309 11951571 ~ 11952608 (-) False G32225
CI01000004_11789063_11823381.mRNA mRNA downstream 17912 11788496 ~ 11824740 (-) True CI01000004_11789063_11823381
CI01000004_11768937_11770193.mRNA mRNA downstream 72224 11768641 ~ 11770428 (-) True CI01000004_11768937_11770193
CI01000004_11731995_11744636.mRNA mRNA downstream 98016 11731852 ~ 11744636 (-) True CI01000004_11731995_11744636
CI01000004_11720195_11723994.mRNA mRNA downstream 118658 11719788 ~ 11723994 (-) True CI01000004_11720195_11723994
CI01000004_11695427_11698763.mRNA mRNA downstream 143889 11694520 ~ 11698763 (-) True CI01000004_11695427_11698763
CI01000004_11930044_11933982.mRNA mRNA upstream 85578 11929840 ~ 11934156 (-) True CI01000004_11930044_11933982
CI01000004_11944095_11946749.mRNA mRNA upstream 99523 11943785 ~ 11947016 (-) True CI01000004_11944095_11946749
CI01000004_11974708_11980518.mRNA mRNA upstream 130382 11974644 ~ 11982295 (-) True CI01000004_11974708_11980518
CI01000004_12025107_12032154.mRNA mRNA upstream 180845 12025107 ~ 12032952 (-) True CI01000004_12025107_12032154
CI01000004_12048597_12107143.mRNA mRNA upstream 203057 12047319 ~ 12108201 (-) True CI01000004_12048597_12107143
TU36455 other downstream 61701 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 429745 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 1092011 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 2435731 9377937 ~ 9406921 (-) True G30316
TU33670 other downstream 3484525 8354498 ~ 8358127 (-) True G29746
TU36531 other upstream 531906 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 2706538 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 2724531 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 2734196 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 2737144 14581406 ~ 14581873 (-) True G33755

Expression Profile