RNA id: TU36552


Basic Information

Item Value
RNA id TU36552
length 314
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G32224
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11950991 ~ 11951304 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACGGCCCTACGCATCAATTTAGTGAACTCTGACCTGACGCATGATGTAATGACGAACGTGGAGGAGAGAGCAAAACAAAACACCGGTCACGAATTAGAAGTCTAAAATAAGAATTTTTATCAGAGGATTTCTATATAAGAGAAGAGGAGCTTGAGTTTGTTGCCAGCCCTTTTTGTTTGAACAGCGAGAGTGTCTAAGCTTACGTTACTCCTACGTCGCTTCAGGGGCTACTCTTTTGGCTTGCTAAGTTGACGTGCGTACGGCCTTCTGCCGGAAGCCAGTTATTTAAGTTTTTAAAGTTATGAATATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36546 lncRNA downstream 3035 11947663 ~ 11947956 (-) True G32222
TU36519 lncRNA downstream 43563 11900123 ~ 11907428 (-) True G32195
TU36483 lncRNA downstream 58018 11892732 ~ 11892973 (-) True G32174
TU36468 lncRNA downstream 106729 11842652 ~ 11844262 (-) True G32163
TU36459 lncRNA downstream 167442 11782248 ~ 11783549 (-) True G32154
TU36563 lncRNA upstream 267 11951571 ~ 11952608 (-) False G32225
TU36555 lncRNA upstream 2109 11953413 ~ 11955175 (-) False G32225
TU36562 lncRNA upstream 2109 11953413 ~ 11954920 (-) False G32225
TU36556 lncRNA upstream 2437 11953741 ~ 11954920 (-) False G32225
TU36557 lncRNA upstream 2437 11953741 ~ 11955287 (-) False G32225
CI01000004_11944095_11946749.mRNA mRNA downstream 3975 11943785 ~ 11947016 (-) True CI01000004_11944095_11946749
CI01000004_11930044_11933982.mRNA mRNA downstream 16835 11929840 ~ 11934156 (-) True CI01000004_11930044_11933982
CI01000004_11826038_11848540.mRNA mRNA downstream 102451 11824907 ~ 11848540 (-) True CI01000004_11826038_11848540
CI01000004_11789063_11823381.mRNA mRNA downstream 126251 11788496 ~ 11824740 (-) True CI01000004_11789063_11823381
CI01000004_11768937_11770193.mRNA mRNA downstream 180563 11768641 ~ 11770428 (-) True CI01000004_11768937_11770193
CI01000004_11974708_11980518.mRNA mRNA upstream 23340 11974644 ~ 11982295 (-) True CI01000004_11974708_11980518
CI01000004_12025107_12032154.mRNA mRNA upstream 73803 12025107 ~ 12032952 (-) True CI01000004_12025107_12032154
CI01000004_12048597_12107143.mRNA mRNA upstream 96015 12047319 ~ 12108201 (-) True CI01000004_12048597_12107143
CI01000004_12111607_12123001.mRNA mRNA upstream 159588 12110892 ~ 12123318 (-) True CI01000004_12111607_12123001
CI01000004_12127993_12144790.mRNA mRNA upstream 175296 12126600 ~ 12144790 (-) True CI01000004_12127993_12144790
TU36455 other downstream 170040 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 538084 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 1200350 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 2544070 9377937 ~ 9406921 (-) True G30316
TU33670 other downstream 3592864 8354498 ~ 8358127 (-) True G29746
TU36531 other upstream 424864 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 2599496 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 2617489 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 2627154 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 2630102 14581406 ~ 14581873 (-) True G33755

Expression Profile