RNA id: TU36035



Basic Information


Item Value
RNA id TU36035
length 1921
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G31790
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12177900 ~ 12179820 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATGATTCACTGTTCAGTTTATTTATTTAACTAAACCACAGATGAGGTTACAAAACAACACAATATCCTGTTATCACCCACTGGCCATTCGTTTTAACAGGAAAAAGAGGGAATGCTTTGTAATAATCTCTTTTCAGTTCTAGGTTAGCACACAGCAAGTGAGTCTCTGTACCACAGATCATGCAGTAATTTTAGGTTAAACATATTCATTTGTAGACACAGAAGTGCACAGAGAGATAGGAAAGGCATAGGGTGATCCATATACACAGTCACTCACACGTAATATTCACATGAACAATAATAACTTCACAAAAAAATATACAAATCACCTCATATTTCAATCCTTTATCTGAAAAAGCTTTAAATTAAGCTTTAAATGTCTGTAAAGCCTTTATACATTTCATCTTAAAAAGAGAACACAGTTGCACATGTGAAATGTCCATCTAAAAACAAAACATAAATGTGTTTTTTTTTTTTAAACTGCCATTTATTTTAACAACAATATTATAGGTTAGCATAGCCTAATCAAGAAATAAAGTGTATGGGTATGTAAGGCTGTCTAACCAAATCTCTTATGACCCACTGCGACACCTATCCATCAAAAAGATGAATGTGTAGTTTACAGAAACAGTACATAATGCAAGCAAAGAGGAATGTCAAAAGAGTGTAAAAATGACTTTAAAACCTATAGAGGTTTTCAGAATTAAGGAATGTTTCCCCAAATTAAAATGTTAACTCACTCTTATACCTATAAGGTCTTAAGAGACAAGAGAGGTATATTGAAGCCCATGGAAAATAAGCCCTATGTGCTTGAAACAAATCATAAAAGTACATTAGATCCTCTTTTGTCTCTTCTGAATGTAATGTCATCTCTTTTCAAATATGTCAGCACCTGATAATTGAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATGAATTACTCACCCTCATGTCATTCCACACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCTGAGAGGTTTCTGTCTCTCCATAGACATCCAATGCAACTACCACTTTCAAGGACCAGAAAGGTAGGAAAGACATCATTAAAGTACTTCATGTGACTCCATTGGTTTAACCTCAATTTTGTGAAGCGACACGAGTGCTTTGTTTATGAAAAAAAAAAAAAAAAACATAATTTACCACTTTTCTTACAAAAACACGTGTTCACGAGAGCTTCATGACATATGTGTGCTGTGTTCAGACCATAGACTTTAAAAAAATATGGACGTAGTGTTCATGTCGTCAACCGTAGGTTTCTGAAGAGCATTTTTTAAACCTAAAGCCAGCCGCTGCCATGTTGGCAGCGCGTCACCGCGCGTCACTCCCGGATAACAGAAAATGTGGAGCTGAGGTGACGTGACGGCAGCAGACAAACGGCTAGTGGTGACAGCAGCGACAGTCCACCTGTCACCGGTGGCCACGGTGACCTTAATTATGTTGAACTTTAAGGCTTTATATAATTTAAACAGATGAGTTATAAAAGAAATTCACCCCCCTCACAGTTGTCATGAAGGGCAAAATTAGCTATATAGACCAAAACCACAATTTGTACCAAGCTGTAAACATGTTTTTTTTCTGCTGTAAAGTTGGGCATTTTAACATGGGGCTCAATGAGATTCTGCTCTCTTTTGGAGCTTGTCCGTAGCGGCCAGTCGATGAATTGCAGTTTAAGTCACTTCCGTATTGGCTTTAAGAGAAACACGGGGAGGTTGCCGCTTGGTTCAGACTTGTGCATCATCTCAACGCGCATGTGTTTGAGAGAGCTTCACAATGCATGCGTGTTGTGTTCGGACCAAGCGGCAACCTCCCCCCAGTTTCTCTTGAAGTCAATACGGATATACGGTTTTGGTCTATACTGCTAATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36050 lncRNA upstream 7251 12170321 ~ 12170649 (+) True G31805
TU36099 lncRNA upstream 15083 12162358 ~ 12162817 (+) True G31854
TU36097 lncRNA upstream 18284 12159365 ~ 12159616 (+) True G31852
TU36006 lncRNA upstream 126329 12050825 ~ 12051571 (+) True G31763
TU36020 lncRNA upstream 144363 12031131 ~ 12033537 (+) True G31777
TU36034 lncRNA downstream 71 12179891 ~ 12182005 (+) True G31789
TU36045 lncRNA downstream 2612 12182432 ~ 12182885 (+) True G31800
TU36145 lncRNA downstream 4464 12184284 ~ 12184753 (+) True G31885
TU36146 lncRNA downstream 6204 12186024 ~ 12186394 (+) True G31886
TU36147 lncRNA downstream 8533 12188353 ~ 12188695 (+) True G31887
CI01000004_12033980_12034384.mRNA mRNA upstream 143498 12033656 ~ 12034402 (+) True CI01000004_12033980_12034384
CI01000004_11897082_11898506.mRNA mRNA upstream 278685 11896232 ~ 11899215 (+) True CI01000004_11897082_11898506
CI01000004_11863724_11890961.mRNA mRNA upstream 286786 11863724 ~ 11891114 (+) True CI01000004_11863724_11890961
CI01000004_11776595_11786233.mRNA mRNA upstream 390983 11776419 ~ 11786917 (+) True CI01000004_11776595_11786233
CI01000004_11771176_11773391.mRNA mRNA upstream 404384 11771089 ~ 11773516 (+) True CI01000004_11771176_11773391
CI01000004_12222833_12223126.mRNA mRNA downstream 42106 12221926 ~ 12223244 (+) True CI01000004_12222833_12223126
CI01000004_12331486_12332789.mRNA mRNA downstream 151020 12330840 ~ 12332997 (+) True CI01000004_12331486_12332789
CI01000004_12353073_12362622.mRNA mRNA downstream 173140 12352960 ~ 12362716 (+) True CI01000004_12353073_12362622
CI01000004_12362858_12363136.mRNA mRNA downstream 182987 12362807 ~ 12363136 (+) True CI01000004_12362858_12363136
CI01000004_12376518_12381495.mRNA mRNA downstream 196604 12376424 ~ 12381705 (+) True CI01000004_12376518_12381495
TU35811 other upstream 510241 11664773 ~ 11665473 (+) False G31611
TU35813 other upstream 510322 11664773 ~ 11665473 (+) True G31611
TU35938 other upstream 535500 11637251 ~ 11642400 (+) True G31710
TU34813 other upstream 1680112 10497376 ~ 10497788 (+) True G30797
TU32792 other upstream 3196916 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU36123 other downstream 12310 12192130 ~ 12195147 (+) False G31865
TU36655 other downstream 462934 12642754 ~ 12655711 (+) True G32314
TU37521 other downstream 1843727 14023547 ~ 14031127 (+) True G33092
TU38554 other downstream 2911424 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 3759537 15939357 ~ 15939950 (+) True G34220

Expression Profile