RNA id: TU36045


Basic Information

Item Value
RNA id TU36045
length 454
lncRNA type intronic
GC content 0.30
exon number 1
gene id G31800
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12182432 ~ 12182885 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGGTAAATACAGTATGTTTTTGGATTGTAAATAGAGAGAAAACGCATGTTGTGTAACAGTATATTAGATCCGTGCATTTGCTCTTAAAGTGACAGCAGCCTAATATTCCTGCTGCGGTCTGTTATGTTAATCGAACAAAAGACAAATAGAAAATCACTCACTGCTCTTGACTGAAAAACTTCTGTAACTTTAATTTTAAGCATTAACCTGAATTTAATTTTTACAATGAAGACTATCCAGTGTTACTTTACATTTGATTACTTTAACTTCTGAAGTTTCTTACCTGAATACTTCTGTTAGACCCACCTGAAAAACTTTAAGCCATATTTTATTTATTTGTCTCTTTATTCTATTATTTATTTGTGCTATCGTTTGCAATTTGTTTGTTTGTTCTTATTTTATTACTCACTGTTTACTTGTCTTTTTTTGTAAATTTAGCTCAATGGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36034 lncRNA upstream 427 12179891 ~ 12182005 (+) True G31789
TU36035 lncRNA upstream 2612 12177900 ~ 12179820 (+) True G31790
TU36050 lncRNA upstream 11783 12170321 ~ 12170649 (+) True G31805
TU36099 lncRNA upstream 19615 12162358 ~ 12162817 (+) True G31854
TU36097 lncRNA upstream 22816 12159365 ~ 12159616 (+) True G31852
TU36145 lncRNA downstream 1399 12184284 ~ 12184753 (+) True G31885
TU36146 lncRNA downstream 3139 12186024 ~ 12186394 (+) True G31886
TU36147 lncRNA downstream 5468 12188353 ~ 12188695 (+) True G31887
TU36121 lncRNA downstream 11067 12193952 ~ 12197418 (+) True G31865
TU36108 lncRNA downstream 37776 12220661 ~ 12257141 (+) False G31862
CI01000004_12033980_12034384.mRNA mRNA upstream 148030 12033656 ~ 12034402 (+) True CI01000004_12033980_12034384
CI01000004_11897082_11898506.mRNA mRNA upstream 283217 11896232 ~ 11899215 (+) True CI01000004_11897082_11898506
CI01000004_11863724_11890961.mRNA mRNA upstream 291318 11863724 ~ 11891114 (+) True CI01000004_11863724_11890961
CI01000004_11776595_11786233.mRNA mRNA upstream 395515 11776419 ~ 11786917 (+) True CI01000004_11776595_11786233
CI01000004_11771176_11773391.mRNA mRNA upstream 408916 11771089 ~ 11773516 (+) True CI01000004_11771176_11773391
CI01000004_12222833_12223126.mRNA mRNA downstream 39041 12221926 ~ 12223244 (+) True CI01000004_12222833_12223126
CI01000004_12331486_12332789.mRNA mRNA downstream 147955 12330840 ~ 12332997 (+) True CI01000004_12331486_12332789
CI01000004_12353073_12362622.mRNA mRNA downstream 170075 12352960 ~ 12362716 (+) True CI01000004_12353073_12362622
CI01000004_12362858_12363136.mRNA mRNA downstream 179922 12362807 ~ 12363136 (+) True CI01000004_12362858_12363136
CI01000004_12376518_12381495.mRNA mRNA downstream 193539 12376424 ~ 12381705 (+) True CI01000004_12376518_12381495
TU35811 other upstream 514773 11664773 ~ 11665473 (+) False G31611
TU35813 other upstream 514854 11664773 ~ 11665473 (+) True G31611
TU35938 other upstream 540032 11637251 ~ 11642400 (+) True G31710
TU34813 other upstream 1684644 10497376 ~ 10497788 (+) True G30797
TU32792 other upstream 3201448 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU36123 other downstream 9245 12192130 ~ 12195147 (+) False G31865
TU36655 other downstream 459869 12642754 ~ 12655711 (+) True G32314
TU37521 other downstream 1840662 14023547 ~ 14031127 (+) True G33092
TU38554 other downstream 2908359 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 3756472 15939357 ~ 15939950 (+) True G34220

Expression Profile