Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU36121 |
| length | 858 |
| lncRNA type | antisense_over |
| GC content | 0.58 |
| exon number | 4 |
| gene id | G31865 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 12192130 ~ 12197418 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU36147 | lncRNA | upstream | 5257 | 12188353 ~ 12188695 (+) | True | G31887 |
| TU36146 | lncRNA | upstream | 7558 | 12186024 ~ 12186394 (+) | True | G31886 |
| TU36145 | lncRNA | upstream | 9199 | 12184284 ~ 12184753 (+) | True | G31885 |
| TU36045 | lncRNA | upstream | 11067 | 12182432 ~ 12182885 (+) | True | G31800 |
| TU36034 | lncRNA | upstream | 11947 | 12179891 ~ 12182005 (+) | True | G31789 |
| TU36108 | lncRNA | downstream | 23243 | 12220661 ~ 12257141 (+) | False | G31862 |
| TU36119 | lncRNA | downstream | 42389 | 12239807 ~ 12292695 (+) | False | G31864 |
| TU36107 | lncRNA | downstream | 58618 | 12256036 ~ 12257141 (+) | True | G31862 |
| TU36117 | lncRNA | downstream | 66477 | 12263895 ~ 12290684 (+) | False | G31864 |
| TU36113 | lncRNA | downstream | 69587 | 12267005 ~ 12292544 (+) | False | G31864 |
| CI01000004_12033980_12034384.mRNA | mRNA | upstream | 159550 | 12033656 ~ 12034402 (+) | True | CI01000004_12033980_12034384 |
| CI01000004_11897082_11898506.mRNA | mRNA | upstream | 294737 | 11896232 ~ 11899215 (+) | True | CI01000004_11897082_11898506 |
| CI01000004_11863724_11890961.mRNA | mRNA | upstream | 302838 | 11863724 ~ 11891114 (+) | True | CI01000004_11863724_11890961 |
| CI01000004_11776595_11786233.mRNA | mRNA | upstream | 407035 | 11776419 ~ 11786917 (+) | True | CI01000004_11776595_11786233 |
| CI01000004_11771176_11773391.mRNA | mRNA | upstream | 420436 | 11771089 ~ 11773516 (+) | True | CI01000004_11771176_11773391 |
| CI01000004_12222833_12223126.mRNA | mRNA | downstream | 24508 | 12221926 ~ 12223244 (+) | True | CI01000004_12222833_12223126 |
| CI01000004_12331486_12332789.mRNA | mRNA | downstream | 133422 | 12330840 ~ 12332997 (+) | True | CI01000004_12331486_12332789 |
| CI01000004_12353073_12362622.mRNA | mRNA | downstream | 155542 | 12352960 ~ 12362716 (+) | True | CI01000004_12353073_12362622 |
| CI01000004_12362858_12363136.mRNA | mRNA | downstream | 165389 | 12362807 ~ 12363136 (+) | True | CI01000004_12362858_12363136 |
| CI01000004_12376518_12381495.mRNA | mRNA | downstream | 179006 | 12376424 ~ 12381705 (+) | True | CI01000004_12376518_12381495 |
| TU35811 | other | upstream | 526293 | 11664773 ~ 11665473 (+) | False | G31611 |
| TU35813 | other | upstream | 526374 | 11664773 ~ 11665473 (+) | True | G31611 |
| TU35938 | other | upstream | 551552 | 11637251 ~ 11642400 (+) | True | G31710 |
| TU34813 | other | upstream | 1696164 | 10497376 ~ 10497788 (+) | True | G30797 |
| TU32792 | other | upstream | 3212968 | 8976438 ~ 8980984 (+) | False | CI01000004_08976512_08980033 |
| TU36655 | other | downstream | 445336 | 12642754 ~ 12655711 (+) | True | G32314 |
| TU37521 | other | downstream | 1826129 | 14023547 ~ 14031127 (+) | True | G33092 |
| TU38554 | other | downstream | 2893826 | 15091244 ~ 15091969 (+) | True | CI01000004_15091390_15096502 |
| TU38784 | other | downstream | 3741939 | 15939357 ~ 15939950 (+) | True | G34220 |
| TU38340 | other | downstream | 3865997 | 16063415 ~ 16066464 (+) | True | G33815 |
