RNA id: TU36220


Basic Information

Item Value
RNA id TU36220
length 236
lncRNA type intronic
GC content 0.40
exon number 1
gene id G31939
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12396391 ~ 12396626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCCCGGTCGACTGACATTTGTTAAGACATCTGCTTTAAACATTACAATGCTCACGGTAACTTTCATTAACTCTACAAGAAGTAAATCCACTTCACCAGCTAATTATTCTTTGACAGCGATGCCATAGAAATATACAGAGCTACCGCAAAAACGGAAGTTCAAAGACAATATTCTAAAGATGGCGGCGCGCTTATTTCTCTGGCGCATAAGGTCTATAAGGAGAATAATCCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36209 lncRNA upstream 44909 12351282 ~ 12351482 (+) True G31930
TU36133 lncRNA upstream 91522 12302619 ~ 12304869 (+) True G31874
TU36111 lncRNA upstream 99382 12278880 ~ 12297009 (+) True G31863
TU36114 lncRNA upstream 103847 12271985 ~ 12292544 (+) True G31864
TU36141 lncRNA upstream 125902 12269833 ~ 12270489 (+) True G31881
TU36233 lncRNA downstream 65904 12462530 ~ 12463374 (+) True G31952
TU36241 lncRNA downstream 76497 12473123 ~ 12473405 (+) True G31959
TU36249 lncRNA downstream 88072 12484698 ~ 12484906 (+) True G31967
TU36251 lncRNA downstream 90307 12486933 ~ 12487443 (+) True G31969
TU36636 lncRNA downstream 104852 12501478 ~ 12501881 (+) True G32296
CI01000004_12390372_12391923.mRNA mRNA upstream 4211 12390372 ~ 12392180 (+) True CI01000004_12390372_12391923
CI01000004_12376518_12381495.mRNA mRNA upstream 14686 12376424 ~ 12381705 (+) True CI01000004_12376518_12381495
CI01000004_12362858_12363136.mRNA mRNA upstream 33255 12362807 ~ 12363136 (+) True CI01000004_12362858_12363136
CI01000004_12353073_12362622.mRNA mRNA upstream 33675 12352960 ~ 12362716 (+) True CI01000004_12353073_12362622
CI01000004_12331486_12332789.mRNA mRNA upstream 63394 12330840 ~ 12332997 (+) True CI01000004_12331486_12332789
CI01000004_12412259_12417501.mRNA mRNA downstream 15509 12412135 ~ 12417517 (+) True CI01000004_12412259_12417501
CI01000004_12418456_12419641.mRNA mRNA downstream 21070 12417696 ~ 12421019 (+) True CI01000004_12418456_12419641
CI01000004_12422242_12423747.mRNA mRNA downstream 25454 12422080 ~ 12424693 (+) True CI01000004_12422242_12423747
CI01000004_12426409_12429382.mRNA mRNA downstream 29783 12426409 ~ 12429470 (+) True CI01000004_12426409_12429382
CI01000004_12553125_12559468.mRNA mRNA downstream 156148 12552774 ~ 12559876 (+) True CI01000004_12553125_12559468
TU36123 other upstream 201244 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 728732 11664773 ~ 11665473 (+) False G31611
TU35813 other upstream 728813 11664773 ~ 11665473 (+) True G31611
TU35938 other upstream 753991 11637251 ~ 11642400 (+) True G31710
TU34813 other upstream 1898603 10497376 ~ 10497788 (+) True G30797
TU36655 other downstream 246128 12642754 ~ 12655711 (+) True G32314
TU37521 other downstream 1626921 14023547 ~ 14031127 (+) True G33092
TU38554 other downstream 2694618 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 3542731 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 3666789 16063415 ~ 16066464 (+) True G33815

Expression Profile