RNA id: TU37195


Basic Information

Item Value
RNA id TU37195
length 234
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G32798
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12965870 ~ 12966103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACAATGGACAAAGGCAGGTGGATAAGACGAATGCAGTAGTCTACAAGACAAACACATCTCTGTAGCCTATAACCACCGTTAACCACCAATAATCGCAATAAGCTCTGCGTTTTGTTACTTTTGATAAGAAACAAAGTGTCATCTTTCAAATTCTGTCCATTTTAACACGAAATTCAAACAGAGAATCCCGTTTTGACGCTCTTTAAAGTGGCACAACATAAGCGCAGTTCAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37114 lncRNA downstream 44336 12913214 ~ 12921534 (-) True G32720
TU37176 lncRNA downstream 167939 12797682 ~ 12797931 (-) True CI01000004_12781663_12809789
TU37095 lncRNA downstream 184380 12775782 ~ 12781490 (-) True G32701
TU37101 lncRNA downstream 252694 12707058 ~ 12713176 (-) True G32707
TU36981 lncRNA downstream 310043 12600800 ~ 12655827 (-) True G32606
TU37207 lncRNA upstream 16353 12982456 ~ 12982781 (-) True G32810
TU37219 lncRNA upstream 33039 12999142 ~ 13000643 (-) True G32822
TU37220 lncRNA upstream 36128 13002231 ~ 13002542 (-) True G32823
TU37104 lncRNA upstream 79716 13045819 ~ 13046163 (-) True G32710
TU37109 lncRNA upstream 80159 13046262 ~ 13046911 (-) True G32715
CI01000004_12952019_12956814.mRNA mRNA downstream 9056 12951759 ~ 12956814 (-) True CI01000004_12952019_12956814
CI01000004_12823734_12925962.mRNA mRNA downstream 39908 12823734 ~ 12925962 (-) True CI01000004_12823734_12925962
CI01000004_12781663_12809789.mRNA mRNA downstream 156081 12781525 ~ 12809789 (-) False CI01000004_12781663_12809789
CI01000004_12748162_12752913.mRNA mRNA downstream 212595 12747939 ~ 12753275 (-) True CI01000004_12748162_12752913
CI01000004_12574165_12577698.mRNA mRNA downstream 385691 12574085 ~ 12580179 (-) True CI01000004_12574165_12577698
CI01000004_13086552_13088659.mRNA mRNA upstream 118721 13084824 ~ 13088898 (-) True CI01000004_13086552_13088659
CI01000004_13089864_13091636.mRNA mRNA upstream 122480 13088583 ~ 13091669 (-) True CI01000004_13089864_13091636
CI01000004_13094468_13114401.mRNA mRNA upstream 127483 13093586 ~ 13114998 (-) True CI01000004_13094468_13114401
CI01000004_13127356_13168751.mRNA mRNA upstream 161253 13127356 ~ 13168751 (-) False CI01000004_13127356_13168751
CI01000004_13208157_13210917.mRNA mRNA upstream 241778 13207881 ~ 13210917 (-) True CI01000004_13208157_13210917
TU36531 other downstream 581090 12376168 ~ 12384780 (-) True G32207
TU36455 other downstream 1184919 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 1552963 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 2215229 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 3558949 9377937 ~ 9406921 (-) True G30316
TU38237 other upstream 1584697 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 1602690 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 1612355 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 1615303 14581406 ~ 14581873 (-) True G33755
TU38263 other upstream 1619068 14585171 ~ 14585745 (-) True G33756

Expression Profile