RNA id: TU37220



Basic Information


Item Value
RNA id TU37220
length 312
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G32823
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13002231 ~ 13002542 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATATGGTGTGCAAAACTGAAAAAAAAAAAAAAAAAGGAAAACCATTACAACCAGCTTTTCAGTACAAGTTTGCAAGCAATATTTTCTCTGCAAGCAGTATGTTTTCATTTCTTCGGCAATGCCATTGAATCAACACCAAATTGCAAACACACTCAAACACCCTCTTGAATGACAAGTGTGTGCACTGGAGAGTGATTAGAGAGGCAGTCTCTCTGTGCCCATAGAGATGTTGAACCTTGGAACTTATGCATTGAATTGAAGAGAAAAACTCAAATGAGTGTTTAGCCCCACATAAGTAGACATGTCTGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37219 lncRNA downstream 1588 12999142 ~ 13000643 (-) True G32822
TU37207 lncRNA downstream 19450 12982456 ~ 12982781 (-) True G32810
TU37195 lncRNA downstream 36128 12965870 ~ 12966103 (-) True G32798
TU37114 lncRNA downstream 80697 12913214 ~ 12921534 (-) True G32720
TU37176 lncRNA downstream 204300 12797682 ~ 12797931 (-) True CI01000004_12781663_12809789
TU37104 lncRNA upstream 43277 13045819 ~ 13046163 (-) True G32710
TU37109 lncRNA upstream 43720 13046262 ~ 13046911 (-) True G32715
TU37247 lncRNA upstream 117694 13120236 ~ 13120630 (-) True G32848
TU37248 lncRNA upstream 120697 13123239 ~ 13140987 (-) True G32849
TU37082 lncRNA upstream 121169 13123711 ~ 13164017 (-) True G32693
CI01000004_12952019_12956814.mRNA mRNA downstream 45417 12951759 ~ 12956814 (-) True CI01000004_12952019_12956814
CI01000004_12823734_12925962.mRNA mRNA downstream 76269 12823734 ~ 12925962 (-) True CI01000004_12823734_12925962
CI01000004_12781663_12809789.mRNA mRNA downstream 192442 12781525 ~ 12809789 (-) False CI01000004_12781663_12809789
CI01000004_12748162_12752913.mRNA mRNA downstream 248956 12747939 ~ 12753275 (-) True CI01000004_12748162_12752913
CI01000004_12574165_12577698.mRNA mRNA downstream 422052 12574085 ~ 12580179 (-) True CI01000004_12574165_12577698
CI01000004_13086552_13088659.mRNA mRNA upstream 82282 13084824 ~ 13088898 (-) True CI01000004_13086552_13088659
CI01000004_13089864_13091636.mRNA mRNA upstream 86041 13088583 ~ 13091669 (-) True CI01000004_13089864_13091636
CI01000004_13094468_13114401.mRNA mRNA upstream 91044 13093586 ~ 13114998 (-) True CI01000004_13094468_13114401
CI01000004_13127356_13168751.mRNA mRNA upstream 124814 13127356 ~ 13168751 (-) False CI01000004_13127356_13168751
CI01000004_13208157_13210917.mRNA mRNA upstream 205339 13207881 ~ 13210917 (-) True CI01000004_13208157_13210917
TU36531 other downstream 617451 12376168 ~ 12384780 (-) True G32207
TU36455 other downstream 1221280 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 1589324 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 2251590 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 3595310 9377937 ~ 9406921 (-) True G30316
TU38237 other upstream 1548258 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 1566251 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 1575916 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 1578864 14581406 ~ 14581873 (-) True G33755
TU38263 other upstream 1582629 14585171 ~ 14585745 (-) True G33756

Expression Profile