RNA id: TU36883



Basic Information


Item Value
RNA id TU36883
length 653
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G32515
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13145133 ~ 13165258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAGCTTTCTGCCCCTCCATAGACAGCTACGCAACTGAAAATGACGCTTCAAAAAGTTCATAAAGAGATCATAAAACTAATTAATATGTATTGAGTAGTTTAGTCCAATTTTTCTGAAGAGGAACAATCACTTTATATGATGAACAGATTGAATTTAGGCTTTTATTCATATATAAACATTCATCAACACATCAGTTGTGTTAAACAAGCATGTTTTCTTGACGTGTGAGAACCAATGAGGTTCATTCTCGTGTGTTACGCAGCACGTTTGAGCTTCCACAAGAACAAATGAGGTTCATTCTTGTGTTACGCAGCACGTTTGAGCTTCCGCAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAGGGATAGTTCACCCAAAAATGAAAATTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36900 lncRNA upstream 85021 13057006 ~ 13060112 (+) True G32526
TU36894 lncRNA upstream 98986 13045817 ~ 13046147 (+) True G32520
TU36891 lncRNA upstream 99425 13035165 ~ 13042032 (+) False G32520
TU36893 lncRNA upstream 100259 13035165 ~ 13044874 (+) False G32520
TU36912 lncRNA upstream 112314 13032612 ~ 13032819 (+) True G32538
TU36963 lncRNA downstream 6090 13171348 ~ 13171675 (+) True G32588
TU36966 lncRNA downstream 12971 13178229 ~ 13178450 (+) True G32591
TU36967 lncRNA downstream 17438 13182696 ~ 13182966 (+) True G32592
TU36969 lncRNA downstream 27460 13192718 ~ 13193161 (+) True G32594
TU36970 lncRNA downstream 28461 13193719 ~ 13194022 (+) True G32595
CI01000004_13062721_13076100.mRNA mRNA upstream 68905 13062721 ~ 13076228 (+) True CI01000004_13062721_13076100
CI01000004_13043279_13051835.mRNA mRNA upstream 93169 13043237 ~ 13051964 (+) False CI01000004_13043279_13051835
CI01000004_12984968_12997831.mRNA mRNA upstream 147070 12984968 ~ 12998063 (+) True CI01000004_12984968_12997831
CI01000004_12810922_12817913.mRNA mRNA upstream 326586 12810572 ~ 12818547 (+) True CI01000004_12810922_12817913
CI01000004_12764916_12775989.mRNA mRNA upstream 368961 12764916 ~ 12776172 (+) True CI01000004_12764916_12775989
CI01000004_13197104_13205895.mRNA mRNA downstream 31846 13197104 ~ 13206585 (+) True CI01000004_13197104_13205895
CI01000004_13211489_13233786.mRNA mRNA downstream 46231 13211489 ~ 13234194 (+) True CI01000004_13211489_13233786
CI01000004_13467845_13475703.mRNA mRNA downstream 302587 13467845 ~ 13476204 (+) True CI01000004_13467845_13475703
CI01000004_13512059_13706090.mRNA mRNA downstream 346801 13512059 ~ 13706090 (+) True CI01000004_13512059_13706090
CI01000004_13708254_13713625.mRNA mRNA downstream 542629 13707887 ~ 13714179 (+) True CI01000004_13708254_13713625
TU36655 other upstream 489422 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 949986 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 1477474 11664773 ~ 11665473 (+) False G31611
TU35813 other upstream 1477555 11664773 ~ 11665473 (+) True G31611
TU35938 other upstream 1502733 11637251 ~ 11642400 (+) True G31710
TU37521 other downstream 858289 14023547 ~ 14031127 (+) True G33092
TU38554 other downstream 1925986 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 2774099 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 2898157 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 3812070 16977328 ~ 17025469 (+) False G34400

Expression Profile