RNA id: TU36966


Basic Information

Item Value
RNA id TU36966
length 222
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G32591
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13178229 ~ 13178450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCTCGGTGGACTTGAACTTGAAAAATGGTGTGTACTGACGTCTTTCCGTGTTTGAAACAACATTCCTTCTCATGTTCATTCATGTTTATTTGATGCTATAAATGAACTAGTAGGAAGAGATGATCGGTTCACGAGCCGCTTGAGCTGAGGTGCTACAGCAATCTGTCACGACACATTAAAGAGCCACAAAACGTTTTTTATTGTTTGAATTTCTTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36963 lncRNA upstream 6554 13171348 ~ 13171675 (+) True G32588
TU36883 lncRNA upstream 12971 13145133 ~ 13165258 (+) True G32515
TU36881 lncRNA upstream 14263 13145133 ~ 13163966 (+) False G32515
TU36900 lncRNA upstream 118117 13057006 ~ 13060112 (+) True G32526
TU36894 lncRNA upstream 132082 13045817 ~ 13046147 (+) True G32520
TU36967 lncRNA downstream 4246 13182696 ~ 13182966 (+) True G32592
TU36969 lncRNA downstream 14268 13192718 ~ 13193161 (+) True G32594
TU36970 lncRNA downstream 15269 13193719 ~ 13194022 (+) True G32595
TU36974 lncRNA downstream 53137 13231587 ~ 13232951 (+) True G32599
TU37294 lncRNA downstream 78480 13256930 ~ 13257222 (+) True G32894
CI01000004_13062721_13076100.mRNA mRNA upstream 102001 13062721 ~ 13076228 (+) True CI01000004_13062721_13076100
CI01000004_13043279_13051835.mRNA mRNA upstream 126265 13043237 ~ 13051964 (+) False CI01000004_13043279_13051835
CI01000004_12984968_12997831.mRNA mRNA upstream 180166 12984968 ~ 12998063 (+) True CI01000004_12984968_12997831
CI01000004_12810922_12817913.mRNA mRNA upstream 359682 12810572 ~ 12818547 (+) True CI01000004_12810922_12817913
CI01000004_12764916_12775989.mRNA mRNA upstream 402057 12764916 ~ 12776172 (+) True CI01000004_12764916_12775989
CI01000004_13197104_13205895.mRNA mRNA downstream 18654 13197104 ~ 13206585 (+) True CI01000004_13197104_13205895
CI01000004_13211489_13233786.mRNA mRNA downstream 33039 13211489 ~ 13234194 (+) True CI01000004_13211489_13233786
CI01000004_13467845_13475703.mRNA mRNA downstream 289395 13467845 ~ 13476204 (+) True CI01000004_13467845_13475703
CI01000004_13512059_13706090.mRNA mRNA downstream 333609 13512059 ~ 13706090 (+) True CI01000004_13512059_13706090
CI01000004_13708254_13713625.mRNA mRNA downstream 529437 13707887 ~ 13714179 (+) True CI01000004_13708254_13713625
TU36655 other upstream 522518 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 983082 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 1510570 11664773 ~ 11665473 (+) False G31611
TU35813 other upstream 1510651 11664773 ~ 11665473 (+) True G31611
TU35938 other upstream 1535829 11637251 ~ 11642400 (+) True G31710
TU37521 other downstream 845097 14023547 ~ 14031127 (+) True G33092
TU38554 other downstream 1912794 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 2760907 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 2884965 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 3798878 16977328 ~ 17025469 (+) False G34400

Expression Profile