RNA id: TU38263


Basic Information

Item Value
RNA id TU38263
length 372
RNA type TUCP
GC content 0.51
exon number 2
gene id G33756
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14585171 ~ 14585745 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCAAAAATGAGATCTCTTTTTTTACTTGTACTATTAGCCATACAGGATAAATCTGTTGGCCAGACAATAACACCATTGCAGACCATAAAAAATGCCACTGAGAGAGAGCCAGTCATTCTTTCATGCAAATATGATGATAGCCAAGTACGTAGTTTACATTGGTATCAACAATATCCTGGATCCAGACCGGAATTTCTGCTGCTTGTTTATGAATCAGGCAGTGTAATACAAGCAGTTCCCCCTTTCCCAAGACTGAATGCCAGCGTGAATAAGATGGAGAAGGAGGTGAATCTGCAGATCTCTTCTGCTGCAGTCACAGATTCAGCGCTGTACTACTGCGCCCTGGAGCCCACAGTGACAGGAAGAGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38240 lncRNA downstream 27265 14557495 ~ 14557906 (-) True CI01000004_14557340_14560918
TU38131 lncRNA downstream 57544 14527408 ~ 14527627 (-) True G33650
TU38129 lncRNA downstream 59032 14525935 ~ 14526139 (-) True G33648
TU38119 lncRNA downstream 63593 14521367 ~ 14521578 (-) True G33638
TU38113 lncRNA downstream 85713 14497445 ~ 14499458 (-) True G33633
TU38265 lncRNA upstream 2853 14588598 ~ 14589028 (-) True G33758
TU38275 lncRNA upstream 27371 14613415 ~ 14613445 (-) True G33768
TU38283 lncRNA upstream 32908 14618653 ~ 14618986 (-) True CI01000004_14618502_14618962
TU39083 lncRNA upstream 101692 14687437 ~ 14693318 (-) True G34461
TU39122 lncRNA upstream 120978 14706723 ~ 14707120 (-) True G34479
CI01000004_14574723_14575066.mRNA mRNA downstream 10105 14573281 ~ 14575066 (-) True CI01000004_14574723_14575066
CI01000004_14571792_14572305.mRNA mRNA downstream 12745 14571741 ~ 14572426 (-) True CI01000004_14571792_14572305
CI01000004_14569847_14571236.mRNA mRNA downstream 13675 14569806 ~ 14571496 (-) True CI01000004_14569847_14571236
CI01000004_14563131_14563558.mRNA mRNA downstream 21370 14562069 ~ 14563801 (-) True CI01000004_14563131_14563558
CI01000004_14557340_14560918.mRNA mRNA downstream 24129 14557281 ~ 14561042 (-) False CI01000004_14557340_14560918
CI01000004_14591958_14594875.mRNA mRNA upstream 5531 14591276 ~ 14594875 (-) False CI01000004_14591958_14594875
CI01000004_14597582_14610531.mRNA mRNA upstream 11618 14597363 ~ 14610531 (-) True CI01000004_14597582_14610531
CI01000004_14611052_14612588.mRNA mRNA upstream 25307 14611052 ~ 14612588 (-) True CI01000004_14611052_14612588
CI01000004_14612987_14614652.mRNA mRNA upstream 27242 14612987 ~ 14614652 (-) False CI01000004_14612987_14614652
CI01000004_14618502_14618962.mRNA mRNA upstream 32411 14618156 ~ 14619037 (-) False CI01000004_14618502_14618962
TU38261 other downstream 3298 14581406 ~ 14581873 (-) True G33755
TU38255 other downstream 6170 14578458 ~ 14579001 (-) True G33750
TU38247 other downstream 15907 14568793 ~ 14569264 (-) True G33746
TU38237 other downstream 33887 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU36531 other downstream 2200391 12376168 ~ 12384780 (-) True G32207
TU38268 other upstream 8822 14595070 ~ 14595126 (-) True G33761
TU38297 other upstream 52106 14637851 ~ 14638474 (-) True G33783
TU39081 other upstream 86794 14672539 ~ 14673015 (-) True G34459
TU39093 other upstream 93394 14679139 ~ 14679707 (-) True CI01000004_14676793_14679785
TU39139 other upstream 134453 14723108 ~ 14723219 (-) True CI01000004_14722691_14723147

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032605 True 366 TR_V_gene 0.43 2 NC_007113.7 36229529 ~ 36230000 (-)