RNA id: TU39348


Basic Information

Item Value
RNA id TU39348
length 383
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G34663
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15031991 ~ 15032373 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCCTCCCAGAATGTTTGTAAAGCAGGGAATTATTCCAAATGACTGCTGTCTGTCAGTGGTGAACACTACTGTAACTGTTCATCTGGGAAAGGATCGTCTGAGGCTTTGCTTCGTTAGCAGAAACGCAGCGTCCACTGCACAGCTAGCTTTTATTATTTATCTGAACGGATGGCTGTCACATCATCATTTGTTGCGGATGTAATTCCGTGTATTCCCAGCGAACAGCCGCGTGTATGCTGTGAGAGACAATATCACACATCCGAGTTCGCAAATGAACGAGTAGTATTACCCAGAATGCGAATTGTAGAGTACAGGCAGTGGAGAGCAGCGACGGTCCCTCAGGAGGAAGCAACAGCCTGTGAGATGATGCTGCACGCGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39346 lncRNA downstream 1250 15030445 ~ 15030741 (-) True G34661
TU39320 lncRNA downstream 36952 14980342 ~ 14995039 (-) True G34635
TU39228 lncRNA downstream 110652 14921068 ~ 14921339 (-) True G34558
TU39220 lncRNA downstream 119255 14910081 ~ 14912736 (-) True G34550
TU39113 lncRNA downstream 138696 14889692 ~ 14893295 (-) True G34470
TU39349 lncRNA upstream 6219 15038592 ~ 15038910 (-) True G34664
TU39351 lncRNA upstream 16339 15048712 ~ 15049140 (-) True G34666
TU39358 lncRNA upstream 21490 15053863 ~ 15054107 (-) True G34670
TU39361 lncRNA upstream 23905 15056278 ~ 15056612 (-) True G34673
TU39362 lncRNA upstream 29098 15061471 ~ 15061797 (-) True G34674
CI01000004_14999971_15002640.mRNA mRNA downstream 29351 14999275 ~ 15002640 (-) True CI01000004_14999971_15002640
CI01000004_14951433_14957539.mRNA mRNA downstream 74150 14951176 ~ 14957841 (-) True CI01000004_14951433_14957539
CI01000004_14897662_14906408.mRNA mRNA downstream 125565 14897250 ~ 14906426 (-) True CI01000004_14897662_14906408
CI01000004_14860344_14863053.mRNA mRNA downstream 168543 14860286 ~ 14863448 (-) True CI01000004_14860344_14863053
CI01000004_14846825_14850092.mRNA mRNA downstream 180460 14846785 ~ 14851531 (-) True CI01000004_14846825_14850092
CI01000004_15063428_15066310.mRNA mRNA upstream 31055 15063428 ~ 15066310 (-) True CI01000004_15063428_15066310
CI01000004_15068206_15086386.mRNA mRNA upstream 35382 15067755 ~ 15086519 (-) True CI01000004_15068206_15086386
CI01000004_15086759_15087492.mRNA mRNA upstream 54312 15086685 ~ 15087533 (-) False CI01000004_15086759_15087492
CI01000004_15159447_15160043.mRNA mRNA upstream 127035 15159408 ~ 15160043 (-) True CI01000004_15159447_15160043
CI01000004_15186236_15193312.mRNA mRNA upstream 153566 15185939 ~ 15195460 (-) True CI01000004_15186236_15193312
TU39317 other downstream 6770 15011361 ~ 15025221 (-) True G34632
TU39197 other downstream 203868 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39186 other downstream 223462 14808052 ~ 14808529 (-) True CI01000004_14808034_14808645
TU39120 other downstream 249335 14782131 ~ 14782656 (-) True CI01000004_14775109_14792782
TU39156 other downstream 275337 14755938 ~ 14756654 (-) False CI01000004_14756092_14758171
TU39354 other upstream 18803 15051176 ~ 15052775 (-) False G34668
TU39355 other upstream 18803 15051176 ~ 15051869 (-) True G34668
TU39323 other upstream 54298 15087179 ~ 15090358 (-) True G34638
TU39411 other upstream 248643 15281016 ~ 15281649 (-) True G34718
TU39318 other upstream 755013 15787386 ~ 15787897 (-) True G34633

Expression Profile