RNA id: TU38549


Basic Information

Item Value
RNA id TU38549
length 204
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G34009
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15045242 ~ 15045445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGTTCTTTTGCCACTCAGTCCAGCTGAGGCAGTGTGTTCCGGCGGGAAAGTGACGTCAAAGCATACCCTCTATTCTGAGGAAAAATGTCACCTCACAATTCTGACATTTTCTTACAATTGCGAGTTCATACCACAAAATTCTGAGGGGAAAAAAAAATTGTCCGATAAAAAGTCTTTCATACCTACTCGCTCCGCGTCGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38544 lncRNA upstream 9009 15036017 ~ 15036233 (+) True G34004
TU38478 lncRNA upstream 191800 14845345 ~ 14853442 (+) True G33951
TU38449 lncRNA upstream 236953 14768014 ~ 14808289 (+) True G33924
TU38444 lncRNA upstream 253127 14758132 ~ 14792115 (+) True G33919
TU38143 lncRNA upstream 509898 14535078 ~ 14535344 (+) True G33662
TU38559 lncRNA downstream 48660 15094105 ~ 15094375 (+) True G34017
TU38569 lncRNA downstream 57905 15103350 ~ 15103577 (+) True G34027
TU38570 lncRNA downstream 58521 15103966 ~ 15104168 (+) True G34028
TU38573 lncRNA downstream 60977 15106422 ~ 15106699 (+) True G34031
TU38575 lncRNA downstream 61291 15106736 ~ 15156513 (+) False G34032
CI01000004_15010164_15028433.mRNA mRNA upstream 16534 15010164 ~ 15028708 (+) True CI01000004_15010164_15028433
CI01000004_14934532_14938094.mRNA mRNA upstream 107148 14933874 ~ 14938094 (+) True CI01000004_14934532_14938094
CI01000004_14919607_14929407.mRNA mRNA upstream 115835 14919475 ~ 14929407 (+) True CI01000004_14919607_14929407
CI01000004_14910312_14915166.mRNA mRNA upstream 129263 14910114 ~ 14915979 (+) True CI01000004_14910312_14915166
CI01000004_14889786_14894594.mRNA mRNA upstream 150320 14889786 ~ 14894922 (+) True CI01000004_14889786_14894594
CI01000004_15048166_15051524.mRNA mRNA downstream 2721 15048166 ~ 15052817 (+) True CI01000004_15048166_15051524
CI01000004_15056504_15062261.mRNA mRNA downstream 10477 15055922 ~ 15063180 (+) True CI01000004_15056504_15062261
CI01000004_15091390_15096502.mRNA mRNA downstream 45755 15091200 ~ 15097173 (+) False CI01000004_15091390_15096502
CI01000004_15110181_15110483.mRNA mRNA downstream 64153 15109598 ~ 15110625 (+) True CI01000004_15110181_15110483
CI01000004_15126731_15131774.mRNA mRNA downstream 81239 15126684 ~ 15132238 (+) True CI01000004_15126731_15131774
TU37521 other upstream 1008342 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 2389531 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 2850095 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 3377583 11664773 ~ 11665473 (+) False G31611
TU38554 other downstream 45799 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 893912 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 1017970 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1931883 16977328 ~ 17025469 (+) False G34400

Expression Profile