RNA id: TU38606


Basic Information

Item Value
RNA id TU38606
length 254
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G34055
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15236130 ~ 15236383 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGATTTTTAGTTGTTTTAGCTTATTTTAATACTTGTTATGTAAATCATCTTGTGTCCCCCTTGGAAGTTTGCTGAGGCCCCCTGGTTGAGAACCACAGATTTAACATCTTTTGAATTAAGTCTTATCAGAACTATAAACTTTTTACATGTACAGGACCCTAGTTCATATCTTTCTTGATGGCATTTGTCATCCATAGATAATGTTAAAGGATTAGTTCACTTCAGAATTAAAATTTCCTGATAATTTACTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38421 lncRNA upstream 12216 15223661 ~ 15223914 (+) True G33896
TU38574 lncRNA upstream 76070 15154062 ~ 15160060 (+) True G34032
TU38575 lncRNA upstream 79617 15106736 ~ 15156513 (+) False G34032
TU38573 lncRNA upstream 129431 15106422 ~ 15106699 (+) True G34031
TU38570 lncRNA upstream 131962 15103966 ~ 15104168 (+) True G34028
TU38612 lncRNA downstream 35261 15271644 ~ 15271905 (+) True G34061
TU38382 lncRNA downstream 182878 15419261 ~ 15425806 (+) True G33857
TU38646 lncRNA downstream 196785 15433168 ~ 15433373 (+) True G34090
TU38659 lncRNA downstream 244880 15481263 ~ 15481530 (+) True G34100
TU38660 lncRNA downstream 245537 15481920 ~ 15482315 (+) True G34101
CI01000004_15229290_15233374.mRNA mRNA upstream 1533 15228776 ~ 15234597 (+) True CI01000004_15229290_15233374
CI01000004_15200553_15209521.mRNA mRNA upstream 26306 15198242 ~ 15209824 (+) True CI01000004_15200553_15209521
CI01000004_15126731_15131774.mRNA mRNA upstream 103892 15126684 ~ 15132238 (+) True CI01000004_15126731_15131774
CI01000004_15110181_15110483.mRNA mRNA upstream 125505 15109598 ~ 15110625 (+) True CI01000004_15110181_15110483
CI01000004_15091390_15096502.mRNA mRNA upstream 138957 15091200 ~ 15097173 (+) False CI01000004_15091390_15096502
CI01000004_15237719_15253901.mRNA mRNA downstream 1336 15237719 ~ 15254158 (+) True CI01000004_15237719_15253901
CI01000004_15260416_15262090.mRNA mRNA downstream 23856 15260239 ~ 15262240 (+) True CI01000004_15260416_15262090
CI01000004_15277204_15286845.mRNA mRNA downstream 40821 15277204 ~ 15286987 (+) True CI01000004_15277204_15286845
CI01000004_15291659_15296777.mRNA mRNA downstream 55276 15291659 ~ 15297847 (+) True CI01000004_15291659_15296777
CI01000004_15316323_15317231.mRNA mRNA downstream 79564 15315947 ~ 15317342 (+) True CI01000004_15316323_15317231
TU38554 other upstream 144161 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1199230 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 2580419 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3040983 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 3568552 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 702974 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 827032 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1740945 16977328 ~ 17025469 (+) False G34400

Expression Profile