RNA id: TU39428


Basic Information

Item Value
RNA id TU39428
length 203
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G34733
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15397806 ~ 15398008 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTAAATATTAATATTATAAAGCGACGAGAATATTTTTGTGTGCGCCAAAAAAAAACAACTTATATAGTGATGGCCGATTTCAAAACACTGCTTCATGAAGCTTCGGAGCGTTATGAATCAGCGTGTCGAATCAACGGTTCGGAACAGCAGAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39319 lncRNA downstream 79584 15316241 ~ 15318222 (-) True G34634
TU39296 lncRNA downstream 105141 15286323 ~ 15292665 (-) True G34611
TU39410 lncRNA downstream 117664 15279943 ~ 15280142 (-) True G34717
TU39407 lncRNA downstream 126907 15270694 ~ 15270899 (-) True G34714
TU39406 lncRNA downstream 135403 15260280 ~ 15262403 (-) True G34713
TU39429 lncRNA upstream 563 15398571 ~ 15398777 (-) True G34734
TU39475 lncRNA upstream 278564 15676572 ~ 15682517 (-) True G34768
TU39298 lncRNA upstream 295082 15693090 ~ 15694289 (-) True G34613
TU39280 lncRNA upstream 298997 15697005 ~ 15700776 (-) True G34595
TU39325 lncRNA upstream 350641 15748649 ~ 15748929 (-) True G34640
CI01000004_15370117_15389832.mRNA mRNA downstream 7974 15369754 ~ 15389832 (-) True CI01000004_15370117_15389832
CI01000004_15326982_15360355.mRNA mRNA downstream 37451 15326859 ~ 15360355 (-) True CI01000004_15326982_15360355
CI01000004_15300222_15308848.mRNA mRNA downstream 88865 15299660 ~ 15308941 (-) True CI01000004_15300222_15308848
CI01000004_15255165_15256033.mRNA mRNA downstream 139579 15254943 ~ 15258227 (-) True CI01000004_15255165_15256033
CI01000004_15217903_15228632.mRNA mRNA downstream 169070 15217738 ~ 15228736 (-) True CI01000004_15217903_15228632
CI01000004_15416876_15425066.mRNA mRNA upstream 18868 15416876 ~ 15425164 (-) True CI01000004_15416876_15425066
CI01000004_15429682_15430354.mRNA mRNA upstream 30510 15428518 ~ 15431049 (-) True CI01000004_15429682_15430354
CI01000004_15434959_15441538.mRNA mRNA upstream 36871 15434879 ~ 15441538 (-) True CI01000004_15434959_15441538
CI01000004_15456870_15468826.mRNA mRNA upstream 58495 15456503 ~ 15468826 (-) True CI01000004_15456870_15468826
CI01000004_15483948_15538159.mRNA mRNA upstream 85940 15483948 ~ 15538159 (-) True CI01000004_15483948_15538159
TU39411 other downstream 116157 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 307448 15087179 ~ 15090358 (-) True G34638
TU39354 other downstream 345031 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 345937 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 372585 15011361 ~ 15025221 (-) True G34632
TU39318 other upstream 389378 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 434565 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 462605 15860613 ~ 15863748 (-) True G34796
TU39656 other upstream 1003737 16401745 ~ 16421506 (-) True G34934
TU39713 other upstream 1104717 16502725 ~ 16515974 (-) True G34982

Expression Profile