RNA id: TU38659


Basic Information

Item Value
RNA id TU38659
length 268
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G34100
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15481263 ~ 15481530 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCACAGTTTCGGCAAATGTAGCCTTTATACTGTCCAATTTTGTTGTGTATTTTAGGCTATGCTAGAGAACCTGCTGATTCATAACTAATTCTGTCATTTAACATTGATGTGATCAATTTATTACAGTTACAGGTCAGGAGGCTGGTGTTCAGTTGTGATTTCCCCTGTTGCTCATTTATAGTTGGTCAAACTGCTACTGCTACAACACCTTGAATTTTTCTTTGTTTTCTTCACACATCACGTATCATATTTCATCTAATGCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38646 lncRNA upstream 47890 15433168 ~ 15433373 (+) True G34090
TU38382 lncRNA upstream 55457 15419261 ~ 15425806 (+) True G33857
TU38612 lncRNA upstream 209358 15271644 ~ 15271905 (+) True G34061
TU38606 lncRNA upstream 244880 15236130 ~ 15236383 (+) True G34055
TU38421 lncRNA upstream 257349 15223661 ~ 15223914 (+) True G33896
TU38660 lncRNA downstream 390 15481920 ~ 15482315 (+) True G34101
TU38700 lncRNA downstream 74325 15555855 ~ 15556213 (+) True G34141
TU38701 lncRNA downstream 74875 15556405 ~ 15556784 (+) True G34142
TU38359 lncRNA downstream 104536 15586066 ~ 15594375 (+) True G33834
TU38407 lncRNA downstream 138549 15620079 ~ 15622320 (+) True G33882
CI01000004_15444403_15453408.mRNA mRNA upstream 27086 15444403 ~ 15454177 (+) True CI01000004_15444403_15453408
CI01000004_15400244_15414139.mRNA mRNA upstream 66887 15400244 ~ 15414376 (+) True CI01000004_15400244_15414139
CI01000004_15325044_15326740.mRNA mRNA upstream 154476 15325044 ~ 15326787 (+) True CI01000004_15325044_15326740
CI01000004_15316323_15317231.mRNA mRNA upstream 163921 15315947 ~ 15317342 (+) True CI01000004_15316323_15317231
CI01000004_15291659_15296777.mRNA mRNA upstream 183416 15291659 ~ 15297847 (+) True CI01000004_15291659_15296777
CI01000004_15631508_15632389.mRNA mRNA downstream 149900 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
CI01000004_15645965_15650241.mRNA mRNA downstream 164435 15645965 ~ 15650274 (+) True CI01000004_15645965_15650241
CI01000004_15687242_15691238.mRNA mRNA downstream 203732 15685262 ~ 15691277 (+) True CI01000004_15687242_15691238
CI01000004_15694735_15698103.mRNA mRNA downstream 213205 15694735 ~ 15698421 (+) True CI01000004_15694735_15698103
CI01000004_15711867_15722470.mRNA mRNA downstream 230337 15711867 ~ 15722582 (+) True CI01000004_15711867_15722470
TU38554 other upstream 389294 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1444363 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 2825552 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3286116 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 3813685 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 457827 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 581885 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1495798 16977328 ~ 17025469 (+) False G34400

Expression Profile