RNA id: TU38325


Basic Information

Item Value
RNA id TU38325
length 461
lncRNA type read_through
GC content 0.48
exon number 3
gene id G33803
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15622928 ~ 15710966 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATGTGTTTGTGGAGCGGAAGGAAGCTTACTGTAGAGGTCACATGCTGAGTGTTTGTCACTCCTCCATTCACCTCGGGGAAGGTCTGAGACAAGAGCCAATAGCTGTCCTCACAGGACATCATCTGAAAAGATGAGCGAGCGCACAGAAAACATGGGTCACAGCGCGGTGTTCTCGCACGAGACGTTGACACATGCGCAGATTACAGCAGGTCAACTGATGCGATCCCCGCTGACTTGGAAACACTCGCGGCTGGCGAATGAGTTCAATGTGTGAGCTAGCACAAGATGCTAGAACCCAATTCAGACTACTCTCCCTCCGCTGACTTGGAAACACTCGCGGCTGGCGAACGAGTTCAATGTGTGAGCTAGCACAAGATGCTAGAACCCAATTCAGACTACTCTCCCTCCGCTCTTTTACTTATTATTAATATATTTTGTTCTTAATAATTCTGTCAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38407 lncRNA upstream 62230 15620079 ~ 15622320 (+) True G33882
TU38359 lncRNA upstream 90175 15586066 ~ 15594375 (+) True G33834
TU38701 lncRNA upstream 127766 15556405 ~ 15556784 (+) True G34142
TU38700 lncRNA upstream 128337 15555855 ~ 15556213 (+) True G34141
TU38660 lncRNA upstream 202235 15481920 ~ 15482315 (+) True G34101
TU38742 lncRNA downstream 37683 15748649 ~ 15748926 (+) True G34181
TU38745 lncRNA downstream 40697 15751663 ~ 15752548 (+) True G34183
TU38748 lncRNA downstream 45069 15756035 ~ 15756391 (+) True G34186
TU38750 lncRNA downstream 56786 15767752 ~ 15767991 (+) True G34188
TU38755 lncRNA downstream 65293 15776259 ~ 15776513 (+) True G34192
CI01000004_15645965_15650241.mRNA mRNA upstream 34276 15645965 ~ 15650274 (+) True CI01000004_15645965_15650241
CI01000004_15631508_15632389.mRNA mRNA upstream 52147 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
CI01000004_15444403_15453408.mRNA mRNA upstream 230373 15444403 ~ 15454177 (+) True CI01000004_15444403_15453408
CI01000004_15400244_15414139.mRNA mRNA upstream 270174 15400244 ~ 15414376 (+) True CI01000004_15400244_15414139
CI01000004_15325044_15326740.mRNA mRNA upstream 357763 15325044 ~ 15326787 (+) True CI01000004_15325044_15326740
CI01000004_15711867_15722470.mRNA mRNA downstream 901 15711867 ~ 15722582 (+) True CI01000004_15711867_15722470
CI01000004_15787382_15803133.mRNA mRNA downstream 76416 15787382 ~ 15803144 (+) True CI01000004_15787382_15803133
CI01000004_15825817_15827475.mRNA mRNA downstream 114851 15825817 ~ 15827603 (+) True CI01000004_15825817_15827475
CI01000004_15859240_15861471.mRNA mRNA downstream 148274 15859240 ~ 15863449 (+) True CI01000004_15859240_15861471
CI01000004_15867404_15875293.mRNA mRNA downstream 156019 15866985 ~ 15875304 (+) True CI01000004_15867404_15875293
TU38554 other upstream 592581 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1647650 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3028839 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3489403 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 4016972 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 228391 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 352449 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1266362 16977328 ~ 17025469 (+) False G34400

Expression Profile