RNA id: TU38742


Basic Information

Item Value
RNA id TU38742
length 278
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G34181
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15748649 ~ 15748926 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAGTTTCAGCGGTTTTCTGCTTTTTCCTCTGTGAGCGTCAACTGAATTCAGAATTGTGACAAAAAATGTTACTATTGTCATAATAATAATAATATATGTGTGATATTTACATCAAAGGAAGAGAACATTGTATGATACTAAACTCCTTTACATGATAGGTAAATATGAAATAATAATAATAATAATAATAAAGAAGTCTTTATTTTTTTTGTTGACTTTTTCTTCAGCTTTTTTTATTTCAAATGCAAATTAAAGGGGTAGTTCACCCAAAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38324 lncRNA upstream 37683 15622928 ~ 15710966 (+) False G33803
TU38328 lncRNA upstream 37683 15647593 ~ 15710966 (+) False G33803
TU38327 lncRNA upstream 37683 15650855 ~ 15710966 (+) False G33803
TU38325 lncRNA upstream 37683 15684550 ~ 15710966 (+) True G33803
TU38407 lncRNA upstream 126329 15620079 ~ 15622320 (+) True G33882
TU38745 lncRNA downstream 2737 15751663 ~ 15752548 (+) True G34183
TU38748 lncRNA downstream 7109 15756035 ~ 15756391 (+) True G34186
TU38750 lncRNA downstream 18826 15767752 ~ 15767991 (+) True G34188
TU38755 lncRNA downstream 27333 15776259 ~ 15776513 (+) True G34192
TU38756 lncRNA downstream 27864 15776790 ~ 15777008 (+) True G34193
CI01000004_15711867_15722470.mRNA mRNA upstream 26067 15711867 ~ 15722582 (+) True CI01000004_15711867_15722470
CI01000004_15694735_15698103.mRNA mRNA upstream 50228 15694735 ~ 15698421 (+) True CI01000004_15694735_15698103
CI01000004_15687242_15691238.mRNA mRNA upstream 57372 15685262 ~ 15691277 (+) True CI01000004_15687242_15691238
CI01000004_15645965_15650241.mRNA mRNA upstream 98375 15645965 ~ 15650274 (+) True CI01000004_15645965_15650241
CI01000004_15631508_15632389.mRNA mRNA upstream 116246 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
CI01000004_15787382_15803133.mRNA mRNA downstream 38456 15787382 ~ 15803144 (+) True CI01000004_15787382_15803133
CI01000004_15825817_15827475.mRNA mRNA downstream 76891 15825817 ~ 15827603 (+) True CI01000004_15825817_15827475
CI01000004_15859240_15861471.mRNA mRNA downstream 110314 15859240 ~ 15863449 (+) True CI01000004_15859240_15861471
CI01000004_15867404_15875293.mRNA mRNA downstream 118059 15866985 ~ 15875304 (+) True CI01000004_15867404_15875293
CI01000004_15892502_15900203.mRNA mRNA downstream 141447 15890373 ~ 15900852 (+) True CI01000004_15892502_15900203
TU38554 other upstream 656680 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1711749 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3092938 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3553502 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 4081071 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 190431 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 314489 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1228402 16977328 ~ 17025469 (+) False G34400

Expression Profile