RNA id: TU39293


Basic Information

Item Value
RNA id TU39293
length 2532
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G34608
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15763242 ~ 15765773 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGGTCAGCATCGGCACCCTGACTGGTCTGCGGCTATGCAGCTCCATACGCAACAAACTGATGCACTGTGTATTCTGACACCTTTCTATCAGAACCAGCATTAACTTCTGGAGCAATCTGAGCTACAGTAGCTCGTCTGTTGGATCAAACCACACGGGCCAGCCTTCGCTCCCCACGTGCATCAATGAGTCTTGGCCGCCCATGACCCTGTCGCCGGTTCACCACTGTTCCTTCCTTGGAGCACTTTTGATAGATATCAGTGGTTTAAGTAGTAGGAAGCCATTTATTAGAATCACAGATAGAGAAACCGAGGGAAAGTTTGTGGACACTGAGGGGAAGCAATTGACTTTTACCAACTGGATTAATGGTCAGCCTGATGATTTTAAGGGACTACAAGACTGTGGTATTATCCCACACTCTGGCCTTTGGGATGATGTCAATTGTGATAGTCCACATCCTATCATATGTGAAATAGAGATTTAAATAGAAAAAGAAATAGAATTTACACTGTAAAAACAAACCTATAGAACCTACTCAAAAAATTGAGGTAACAAGTAAAAAGTCTACCTGACATAATATATTACAACTTATAAAAAATGAGTAATATGAACTTGATTATAATAGCTTCTGTAGCTTGCATAGCAAACATTTGCAATGAATAAGTTGTCACCAGAGGCATCAGGCCCCCTCAGATTTCCATTACCATATATACATATATATATATATATGTGTGTGTGTGTGTGTGTGTAACCCCTCTACCCAGGTCCTACTCGCCCCGCGATGCGCGGGCCTCGAACCTAGGTCTCTGGCATGTGAGTCGGACACTCTAACAAGGAGGCTAAAGGCCAAAACTTGTAGTGTCAGTTTACTCACACAGCAACTACTAGCTGGCCTTCATTACACGCACATATAAATACAAATATATATATATATATATATAATTAACCCATTGAAGCGTATGATCACATCGGTGTGATTAGAAACGTTCAGTGCGTCACATGATCAACTGCTACATTCAACTGTTTAGTGTTTTCAACCTTATGTTTATTTTATGTTTCTGACATTTAAATACAGATAAGTACTAGCATTATAGTTTGTAAAATATACACTAATGTTTATGGAAGAGGCAATAACAACTATTTCAAAAATAATTTGACAGCCCCGCCCCTTTTCAGCACAGCGCTCGTTGTCTTTTGTCTTCCGGTTTGTATTTCCACAGTGATCTTACGTATTTATAAATGAACTGGTCTACTGACATTTGTAAAGACATCTGCTTTAAACATTACAATGCTCATGATAACTTTCTTTAACTCTACAAGTAAATCCACTTCACCAGCTAATTATTCTTTGACAGCGATGCGATAGAAATGTACAGAGCTACCACAAAGACGGAAGATCAAAGACAATATTATAAAGATGGCGGCGCGCTTGTTTCTCTGTGTAACGAGGCGGGACTCAGGGTAAGATCCATTAGCAAGCTTTTATTAAACAGTTCTTAGTCAAACAGGCAATGGTGGAATAACAGCAAATTGGTATGGCAGAGAGCAGGCAGAATCGTAGTCGAGGAACAGGCAAAGGGTCAGGGCTGGCAGATAACAATCGTAAATCCAAAACAGAGCAAGTAGTCCAAAGGGCAGGCAGCAGAGAATCGTACACAGGGAACAGACAGGAACAGGAACAGGAACAGGAACAGGAACGCGGGCGGGCAGACAGACAGACAAGATAACAAGTAAACAAGACCTCGCAAAGTGTGTGTGTGGATGTGAGTGGCTTAAATAGTCCGGGTAATGAGCTGCAGCTGGGTGTGGTGATTATTGATTGGTGGAGTGAGTGCAATGTGATAGGCAGGGAGGATTGTGGGAAATGAAGTCCGGGAATGACTGGAACTGTGACACTCTGGCTCATAAGAGTTGCGTCCCAAATGACGCACTATACACTATGCACTTATACACTATGTACTTATGCATGTAGTGTATGAATTTTATAAATTTATTTTGTCATTAAACATCGAAGTCTGATCCCCCCTCCACTTCCGCTACGTAATTAAAGCTGCGACAGCTGAGTGCATGAAGTGTCCAACATTCCACACTTCATTTTTTCCATTAATTAAGTGCATCATCCGTGCACTTTTTCTTTCTGGAATTTTCTGTGAACGCACTACTCACACTATTTGTACTTAAAAATGTCATAGAATAGTGCATAAGTATGCGAATTGGGACGCACCTAATGTCTATATGTAACTATAAAGTTTACTCTAATCTTAGAATATTGTTGGTGCAAAATTAATATTGCCCCAGTATTGTCGTCTTCTTGGTGAATTTCTTAGTTTTGAAGCTCACAGCCTGGGCGATTTGTGAGGTCAGAAACCATCGAATTTTACATATTTAAGTAGATTGAGCACAATTAATTTCGAAACAAAATTGTGTTACTTTGTGTAACATTTTTTAATTAAGTAAACTGAACAAGCAGCAAAAATCATTTTTACAATATTATGAAATATACAAATCTGTGATACTAATATGCTATTAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39325 lncRNA downstream 14313 15748649 ~ 15748929 (-) True G34640
TU39280 lncRNA downstream 62466 15697005 ~ 15700776 (-) True G34595
TU39298 lncRNA downstream 68953 15693090 ~ 15694289 (-) True G34613
TU39475 lncRNA downstream 80725 15676572 ~ 15682517 (-) True G34768
TU39429 lncRNA downstream 364465 15398571 ~ 15398777 (-) True G34734
TU39483 lncRNA upstream 1536 15767309 ~ 15768270 (-) True G34776
TU39485 lncRNA upstream 6386 15772159 ~ 15772396 (-) True G34778
TU39305 lncRNA upstream 13903 15779676 ~ 15780614 (-) True G34620
TU39486 lncRNA upstream 30237 15796010 ~ 15796390 (-) True G34779
TU39326 lncRNA upstream 35230 15801003 ~ 15809605 (-) True G34641
CI01000004_15760841_15761919.mRNA mRNA downstream 1255 15760790 ~ 15761987 (-) True CI01000004_15760841_15761919
CI01000004_15751774_15753519.mRNA mRNA downstream 7845 15751733 ~ 15755397 (-) True CI01000004_15751774_15753519
CI01000004_15726420_15733105.mRNA mRNA downstream 30137 15726052 ~ 15733105 (-) True CI01000004_15726420_15733105
CI01000004_15702447_15708692.mRNA mRNA downstream 54550 15702371 ~ 15708692 (-) True CI01000004_15702447_15708692
CI01000004_15653837_15673610.mRNA mRNA downstream 89632 15653725 ~ 15673610 (-) True CI01000004_15653837_15673610
CI01000004_15827737_15828938.mRNA mRNA upstream 61895 15827668 ~ 15828960 (-) True CI01000004_15827737_15828938
CI01000004_15832789_15836192.mRNA mRNA upstream 66811 15832584 ~ 15836204 (-) False CI01000004_15832789_15836192
CI01000004_15836936_15841048.mRNA mRNA upstream 70689 15836462 ~ 15841048 (-) False CI01000004_15836936_15841048
CI01000004_15881212_15881809.mRNA mRNA upstream 115090 15880863 ~ 15883692 (-) False CI01000004_15881212_15881809
CI01000004_15911104_15915972.mRNA mRNA upstream 145163 15910936 ~ 15916019 (-) True CI01000004_15911104_15915972
TU39411 other downstream 481593 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 672884 15087179 ~ 15090358 (-) True G34638
TU39354 other downstream 710467 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 711373 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 738021 15011361 ~ 15025221 (-) True G34632
TU39318 other upstream 21613 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 66800 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 94840 15860613 ~ 15863748 (-) True G34796
TU39656 other upstream 635972 16401745 ~ 16421506 (-) True G34934
TU39713 other upstream 736952 16502725 ~ 16515974 (-) True G34982

Expression Profile