RNA id: TU39483


Basic Information

Item Value
RNA id TU39483
length 962
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G34776
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15767309 ~ 15768270 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTTTTGCAGTAAAATATCCAAAAACCACTAGGCCAGTGTTATATATCTTGTTCACTTGAGTACTTACAATATCCCAAATGTTTCCAACTATTTGTAAATCGTGAGAAAATTGCAATTTTAACCAAGGCTCCGGGACGTGTGAGGAGTCGCCTGTCAGTTGCGTCATACCCGCGTTACCCTCCGTTTCCGGTTTTATTTTGTAAAAACCATGGAAACACCAAAGACGCTTTAATATTTACATGTTTTAATAGACAAGGAAACAACTGTTTTGATATATTTATAGACAGAAAACTAATTATTGTTATATAGCTCAACACGTTTAGTCTTATTGTTTAAATCTAATTTTTTGCGAGTACCATGCTTTACCATGCCTCAGAGAAAAACACTATTTTGTCAAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGAATTTTCTCCATCATACAATACGTTTTAAAATTAATTTCATGCCATTTATCAACACAAGCCATCCAGCATTTAATATGATATTCTAAAATCGATCTATCTTACTGCAGTGTGCAACAGTGTCTCACAGCAGCCGCCGAGCGAACGCACAGAGTAACGTTATAACATCATTTTCAAAACTCTCAAATGTATCTCGTATGATAAACAAAGCTGCGTTACCTCATACTCATGACCGGAAAAGCGGAAGCGGCGCCGGCGACTGTGGCATAATAAAAGTTCCGCTGCTCGTGAGGCAATCGCTCCAGCGGCCTCGTTCAGCTCCCGCAACACTCGGTCCTGCTCTGCTTCATACTACAGTAACGTTAATAATCGCATCCATGAACATGATTTCTTCCCGAGTCCTATCCCGATTCTCCACCGGCTGTGATGTGAAGACCACATGTCCCAAGATTCCGCGCTCAAACTTGCCGTCATCAAGCTACGCCTTTGTTTTGAATATACATCTAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39293 lncRNA downstream 1536 15763242 ~ 15765773 (-) True G34608
TU39325 lncRNA downstream 18380 15748649 ~ 15748929 (-) True G34640
TU39280 lncRNA downstream 66533 15697005 ~ 15700776 (-) True G34595
TU39298 lncRNA downstream 73020 15693090 ~ 15694289 (-) True G34613
TU39475 lncRNA downstream 84792 15676572 ~ 15682517 (-) True G34768
TU39485 lncRNA upstream 3889 15772159 ~ 15772396 (-) True G34778
TU39305 lncRNA upstream 11406 15779676 ~ 15780614 (-) True G34620
TU39486 lncRNA upstream 27740 15796010 ~ 15796390 (-) True G34779
TU39326 lncRNA upstream 32733 15801003 ~ 15809605 (-) True G34641
TU39491 lncRNA upstream 44759 15813029 ~ 15813907 (-) True G34784
CI01000004_15760841_15761919.mRNA mRNA downstream 5322 15760790 ~ 15761987 (-) True CI01000004_15760841_15761919
CI01000004_15751774_15753519.mRNA mRNA downstream 11912 15751733 ~ 15755397 (-) True CI01000004_15751774_15753519
CI01000004_15726420_15733105.mRNA mRNA downstream 34204 15726052 ~ 15733105 (-) True CI01000004_15726420_15733105
CI01000004_15702447_15708692.mRNA mRNA downstream 58617 15702371 ~ 15708692 (-) True CI01000004_15702447_15708692
CI01000004_15653837_15673610.mRNA mRNA downstream 93699 15653725 ~ 15673610 (-) True CI01000004_15653837_15673610
CI01000004_15827737_15828938.mRNA mRNA upstream 59398 15827668 ~ 15828960 (-) True CI01000004_15827737_15828938
CI01000004_15832789_15836192.mRNA mRNA upstream 64314 15832584 ~ 15836204 (-) False CI01000004_15832789_15836192
CI01000004_15836936_15841048.mRNA mRNA upstream 68192 15836462 ~ 15841048 (-) False CI01000004_15836936_15841048
CI01000004_15881212_15881809.mRNA mRNA upstream 112593 15880863 ~ 15883692 (-) False CI01000004_15881212_15881809
CI01000004_15911104_15915972.mRNA mRNA upstream 142666 15910936 ~ 15916019 (-) True CI01000004_15911104_15915972
TU39411 other downstream 485660 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 676951 15087179 ~ 15090358 (-) True G34638
TU39354 other downstream 714534 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 715440 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 742088 15011361 ~ 15025221 (-) True G34632
TU39318 other upstream 19116 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 64303 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 92343 15860613 ~ 15863748 (-) True G34796
TU39656 other upstream 633475 16401745 ~ 16421506 (-) True G34934
TU39713 other upstream 734455 16502725 ~ 16515974 (-) True G34982

Expression Profile