RNA id: TU38755


Basic Information

Item Value
RNA id TU38755
length 255
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G34192
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15776259 ~ 15776513 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATCAGTTTGTAATTCTTGGTTTGAATTAATTTAATTCACTGTTATAATTATACAATGCACAGTAACTTTAAATAATTATTTATGGTCATTACCTAACTTCTAAAAGTTTCCACATGGGTTAAGATATTATAGCATAATGTGTTCAAGGAAAATATATCATCCAGAGGCGCATCTGGTACTCACAAACAAAATACGCGTTGGTGTTTTTTAAGATGTTGCCCTGTCTTATAATAAAGGCTTTTTACCCTTCGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38750 lncRNA upstream 8268 15767752 ~ 15767991 (+) True G34188
TU38748 lncRNA upstream 19868 15756035 ~ 15756391 (+) True G34186
TU38745 lncRNA upstream 23711 15751663 ~ 15752548 (+) True G34183
TU38742 lncRNA upstream 27333 15748649 ~ 15748926 (+) True G34181
TU38327 lncRNA upstream 65293 15650855 ~ 15710966 (+) False G33803
TU38756 lncRNA downstream 277 15776790 ~ 15777008 (+) True G34193
TU38757 lncRNA downstream 520 15777033 ~ 15777351 (+) True G34194
TU38758 lncRNA downstream 2653 15779166 ~ 15779498 (+) True G34195
TU38759 lncRNA downstream 3162 15779675 ~ 15780624 (+) False G34196
TU38760 lncRNA downstream 3162 15779675 ~ 15780095 (+) True G34196
CI01000004_15711867_15722470.mRNA mRNA upstream 53677 15711867 ~ 15722582 (+) True CI01000004_15711867_15722470
CI01000004_15694735_15698103.mRNA mRNA upstream 77838 15694735 ~ 15698421 (+) True CI01000004_15694735_15698103
CI01000004_15687242_15691238.mRNA mRNA upstream 84982 15685262 ~ 15691277 (+) True CI01000004_15687242_15691238
CI01000004_15645965_15650241.mRNA mRNA upstream 125985 15645965 ~ 15650274 (+) True CI01000004_15645965_15650241
CI01000004_15631508_15632389.mRNA mRNA upstream 143856 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
CI01000004_15787382_15803133.mRNA mRNA downstream 10869 15787382 ~ 15803144 (+) True CI01000004_15787382_15803133
CI01000004_15825817_15827475.mRNA mRNA downstream 49304 15825817 ~ 15827603 (+) True CI01000004_15825817_15827475
CI01000004_15859240_15861471.mRNA mRNA downstream 82727 15859240 ~ 15863449 (+) True CI01000004_15859240_15861471
CI01000004_15867404_15875293.mRNA mRNA downstream 90472 15866985 ~ 15875304 (+) True CI01000004_15867404_15875293
CI01000004_15892502_15900203.mRNA mRNA downstream 113860 15890373 ~ 15900852 (+) True CI01000004_15892502_15900203
TU38554 other upstream 684290 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1739359 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3120548 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3581112 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 4108681 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 162844 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 286902 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1200815 16977328 ~ 17025469 (+) False G34400

Expression Profile