RNA id: TU38757


Basic Information

Item Value
RNA id TU38757
length 319
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G34194
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15777033 ~ 15777351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCACGAACTCTGTCTCTGTGGCTCCCTCCGATCGCCACCTGAGGGCACCCTCACCAGAGTATTAACTGTTCATGGACTACATTTCCCACACCCCGTACCTGGACTGATTGCACACTCCCACCTGATCCATATTCCCCGGACTATAAAAGACCTTCATGCCCCACAATGCTTCGCGAAGTCTTGTTTTGCCCTGGCTAACATTTCTGAGTGTTTATTACTGTGTATTATTTCCCGTGTATGACCTTGGACTGCCTGATCACCTTTTTTCCTGTTTGCTGCCTGCCCTGTGATATCTCTGCCTGTTTACCGGTTAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38756 lncRNA upstream 25 15776790 ~ 15777008 (+) True G34193
TU38755 lncRNA upstream 520 15776259 ~ 15776513 (+) True G34192
TU38750 lncRNA upstream 9042 15767752 ~ 15767991 (+) True G34188
TU38748 lncRNA upstream 20642 15756035 ~ 15756391 (+) True G34186
TU38745 lncRNA upstream 24485 15751663 ~ 15752548 (+) True G34183
TU38758 lncRNA downstream 1815 15779166 ~ 15779498 (+) True G34195
TU38759 lncRNA downstream 2324 15779675 ~ 15780624 (+) False G34196
TU38760 lncRNA downstream 2324 15779675 ~ 15780095 (+) True G34196
TU38769 lncRNA downstream 65781 15843132 ~ 15843402 (+) True G34205
TU38777 lncRNA downstream 109927 15887278 ~ 15887534 (+) True G34213
CI01000004_15711867_15722470.mRNA mRNA upstream 54451 15711867 ~ 15722582 (+) True CI01000004_15711867_15722470
CI01000004_15694735_15698103.mRNA mRNA upstream 78612 15694735 ~ 15698421 (+) True CI01000004_15694735_15698103
CI01000004_15687242_15691238.mRNA mRNA upstream 85756 15685262 ~ 15691277 (+) True CI01000004_15687242_15691238
CI01000004_15645965_15650241.mRNA mRNA upstream 126759 15645965 ~ 15650274 (+) True CI01000004_15645965_15650241
CI01000004_15631508_15632389.mRNA mRNA upstream 144630 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
CI01000004_15787382_15803133.mRNA mRNA downstream 10031 15787382 ~ 15803144 (+) True CI01000004_15787382_15803133
CI01000004_15825817_15827475.mRNA mRNA downstream 48466 15825817 ~ 15827603 (+) True CI01000004_15825817_15827475
CI01000004_15859240_15861471.mRNA mRNA downstream 81889 15859240 ~ 15863449 (+) True CI01000004_15859240_15861471
CI01000004_15867404_15875293.mRNA mRNA downstream 89634 15866985 ~ 15875304 (+) True CI01000004_15867404_15875293
CI01000004_15892502_15900203.mRNA mRNA downstream 113022 15890373 ~ 15900852 (+) True CI01000004_15892502_15900203
TU38554 other upstream 685064 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1740133 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3121322 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3581886 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 4109455 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 162006 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 286064 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1199977 16977328 ~ 17025469 (+) False G34400

Expression Profile