RNA id: TU38760


Basic Information

Item Value
RNA id TU38760
length 421
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G34196
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15779675 ~ 15780624 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCCAACTCTGAAATGGCAGTTTATTATTGAGTCAACAAGAATTTACAAACAATGCGAAATCTACATTAATTACAATGGTTGATTAACGTTACAATCTTCTACAGGTGTTATGCCGAGTTCTGCATAATGTTATATGCCAAGAATTGCATGCACCTCCAAGTACTGTTTAAAAACGATATAATATTCTTTGTGGGGTTTATTAATGGTGATAAATAATTCAGCAGAACAGATGTTGTAGGCTACCTGCAGAGATTTGCATCCACCTCTTTTCTCAGCATAAATGACTGTTACCTCCCGTGAGGTGCATGCAGAACTCACCATAACGGGACGTTCTAAAACGTTTAACGTGAAAAAGCCTAACGTGGCTTAATTTACTAAGACAGTGTTATTAACAAGCCAAACTTAGTAAACACCATACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38758 lncRNA upstream 177 15779166 ~ 15779498 (+) True G34195
TU38757 lncRNA upstream 2324 15777033 ~ 15777351 (+) True G34194
TU38756 lncRNA upstream 2667 15776790 ~ 15777008 (+) True G34193
TU38755 lncRNA upstream 3162 15776259 ~ 15776513 (+) True G34192
TU38750 lncRNA upstream 11684 15767752 ~ 15767991 (+) True G34188
TU38769 lncRNA downstream 63037 15843132 ~ 15843402 (+) True G34205
TU38777 lncRNA downstream 107183 15887278 ~ 15887534 (+) True G34213
TU38778 lncRNA downstream 140588 15920683 ~ 15920886 (+) True G34214
TU38779 lncRNA downstream 143609 15923704 ~ 15924496 (+) True G34215
TU38780 lncRNA downstream 148406 15928501 ~ 15928750 (+) True G34216
CI01000004_15711867_15722470.mRNA mRNA upstream 57093 15711867 ~ 15722582 (+) True CI01000004_15711867_15722470
CI01000004_15694735_15698103.mRNA mRNA upstream 81254 15694735 ~ 15698421 (+) True CI01000004_15694735_15698103
CI01000004_15687242_15691238.mRNA mRNA upstream 88398 15685262 ~ 15691277 (+) True CI01000004_15687242_15691238
CI01000004_15645965_15650241.mRNA mRNA upstream 129401 15645965 ~ 15650274 (+) True CI01000004_15645965_15650241
CI01000004_15631508_15632389.mRNA mRNA upstream 147272 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
CI01000004_15787382_15803133.mRNA mRNA downstream 7287 15787382 ~ 15803144 (+) True CI01000004_15787382_15803133
CI01000004_15825817_15827475.mRNA mRNA downstream 45722 15825817 ~ 15827603 (+) True CI01000004_15825817_15827475
CI01000004_15859240_15861471.mRNA mRNA downstream 79145 15859240 ~ 15863449 (+) True CI01000004_15859240_15861471
CI01000004_15867404_15875293.mRNA mRNA downstream 86890 15866985 ~ 15875304 (+) True CI01000004_15867404_15875293
CI01000004_15892502_15900203.mRNA mRNA downstream 110278 15890373 ~ 15900852 (+) True CI01000004_15892502_15900203
TU38554 other upstream 687706 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1742775 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3123964 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3584528 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 4112097 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 159262 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 283320 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1197233 16977328 ~ 17025469 (+) False G34400

Expression Profile