RNA id: TU38794


Basic Information

Item Value
RNA id TU38794
length 227
lncRNA type intronic
GC content 0.40
exon number 1
gene id G34229
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16019263 ~ 16019489 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAGGATGAAACTATCACATTAAACATGAGTTATGTGTTCTGAACTATACTTATTAGTATAGTATGTATAGTATAGTATATATATGCAGTGGCCACCTTTATCAGTTTCATGATTTGGAATTAAAAGGGTGTATGGGTGCATTTTTAACAATATAACTATCTGTTTAGTATCAGTTTCCTGACCGTTTTTTATTCTTGCACCTATTGGACTATTATTATAAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38793 lncRNA upstream 4157 16014906 ~ 16015106 (+) True G34228
TU38780 lncRNA upstream 90513 15928501 ~ 15928750 (+) True G34216
TU38779 lncRNA upstream 94767 15923704 ~ 15924496 (+) True G34215
TU38778 lncRNA upstream 98377 15920683 ~ 15920886 (+) True G34214
TU38777 lncRNA upstream 131729 15887278 ~ 15887534 (+) True G34213
TU38355 lncRNA downstream 139223 16158712 ~ 16160998 (+) True G33830
TU38831 lncRNA downstream 161019 16180508 ~ 16180849 (+) True G34266
TU38864 lncRNA downstream 281744 16301233 ~ 16309306 (+) True G34297
TU38889 lncRNA downstream 429357 16448846 ~ 16449090 (+) True G34322
TU38891 lncRNA downstream 430191 16449680 ~ 16455626 (+) True G34323
CI01000004_16008731_16013012.mRNA mRNA upstream 6214 16008615 ~ 16013049 (+) True CI01000004_16008731_16013012
CI01000004_15947153_15953245.mRNA mRNA upstream 65393 15947153 ~ 15953870 (+) True CI01000004_15947153_15953245
CI01000004_15930478_15944692.mRNA mRNA upstream 74519 15930478 ~ 15944744 (+) True CI01000004_15930478_15944692
CI01000004_15906907_15909647.mRNA mRNA upstream 109594 15906907 ~ 15909669 (+) True CI01000004_15906907_15909647
CI01000004_15892502_15900203.mRNA mRNA upstream 118411 15890373 ~ 15900852 (+) True CI01000004_15892502_15900203
CI01000004_16037124_16044487.mRNA mRNA downstream 17635 16037124 ~ 16044563 (+) True CI01000004_16037124_16044487
CI01000004_16090188_16090874.mRNA mRNA downstream 69937 16089426 ~ 16090928 (+) True CI01000004_16090188_16090874
CI01000004_16117960_16125599.mRNA mRNA downstream 98395 16117884 ~ 16125874 (+) True CI01000004_16117960_16125599
CI01000004_16138496_16143438.mRNA mRNA downstream 119007 16138496 ~ 16144117 (+) True CI01000004_16138496_16143438
CI01000004_16217935_16218580.mRNA mRNA downstream 198364 16217853 ~ 16218580 (+) True CI01000004_16217935_16218580
TU38784 other upstream 79313 15939357 ~ 15939950 (+) True G34220
TU38554 other upstream 927294 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1982363 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3363552 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3824116 12192130 ~ 12195147 (+) False G31865
TU38340 other downstream 43926 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 957839 16977328 ~ 17025469 (+) False G34400

Expression Profile