RNA id: TCONS_00013503



Basic Information


Item Value
RNA id TCONS_00013503
length 1191
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_006863
representative False

Chromosome Information


Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40961735 ~ 40977410 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGACACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGGCCATTGGAAAACCACACAGCCACAATGAAGATGGGAATCCTTGAAACAGaacgcagcagcagcagcatgaaCTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGACTTTATCAATGCATCTTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGAAGTTCCTCTTGAagatttctttttcacttttcttgaaacttttgtgagttttttttttctgttctggaaTCATCTGTCAACTAGGTAAAGTAACCCATTGTTTAGATTTGATggtgtttttgacattttaatattcatttattaattttccttcagcttagtctcgtGTTTAtcagggggcgccacagcggaatgaaccgttcatttttatatgcaaatatattaaatgtttaatgttaatgaatgggtttaaccattaaaaatgtgatttcataAGTTCAGATTATCTTTTGTAGAATGAAAGTATTCAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgctgtttttttattttatttacatttttgcatataTTTGGGATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcacgtaagagcaggcgcagccatttgagtctttttggcttgagatttccgctctcattcacttccattgatttttagacgttaaaacagcttgttatgatgcttaatgttgcaaactgatattttcttattatattattctgctttgtctgtagagtcataaacacactagtttgtagagcaagtagtttgtctgttttctgctgtttattattgttagtcatttctcccatagggctCTGAATCAGATGTTCTAAAACAAATCGCAAAGACGAGGGCACTTCCACCTTAAAGAATGAGGTCAATATCAGGAGAAATGAACATGCTAGAATTTATACGGTACACTTTGTtgaaatgtgtaatgtatttgttattcTAATGTACTTTTACAATAGTGT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00013878 lncRNA downstream 546688 40418316 ~ 40419308 (-) True XLOC_006859
TCONS_00013186 lncRNA downstream 672028 40293418 ~ 40293968 (-) True XLOC_006856
TCONS_00013501 lncRNA downstream 1461503 39499592 ~ 39504493 (-) True XLOC_006850
TCONS_00013500 lncRNA downstream 1465689 39499592 ~ 39500307 (-) False XLOC_006850
TCONS_00013165 lncRNA downstream 2173995 38717175 ~ 38792001 (-) True XLOC_006844
TCONS_00013879 lncRNA upstream 34422 41011832 ~ 41114062 (-) False XLOC_006864
TCONS_00013880 lncRNA upstream 52050 41029460 ~ 41114062 (-) True XLOC_006864
TCONS_00013881 lncRNA upstream 888759 41866169 ~ 41867831 (-) False XLOC_006869
TCONS_00013505 lncRNA upstream 890204 41867614 ~ 41869392 (-) True XLOC_006869
TCONS_00013882 lncRNA upstream 1011494 41988904 ~ 41992203 (-) True XLOC_006873
TCONS_00013193 mRNA downstream 211497 40746281 ~ 40754499 (-) False XLOC_006862
TCONS_00013194 mRNA downstream 211497 40749580 ~ 40754499 (-) True XLOC_006862
TCONS_00013192 mRNA downstream 239131 40716319 ~ 40726865 (-) True XLOC_006861
TCONS_00013191 mRNA downstream 466700 40462366 ~ 40499296 (-) True XLOC_006860
TCONS_00013190 mRNA downstream 554079 40409951 ~ 40411917 (-) True XLOC_006858
TCONS_00013195 mRNA upstream 147184 41124594 ~ 41155472 (-) False XLOC_006865
TCONS_00013196 mRNA upstream 147948 41125358 ~ 41482064 (-) False XLOC_006865
TCONS_00013197 mRNA upstream 193276 41170686 ~ 41546779 (-) False XLOC_006865
TCONS_00013198 mRNA upstream 193924 41171334 ~ 41482064 (-) True XLOC_006865
TCONS_00013202 mRNA upstream 910165 41887575 ~ 41901225 (-) False XLOC_006870
TCONS_00013170 other downstream 1723324 39242555 ~ 39242672 (-) True XLOC_006848
TCONS_00013167 other downstream 2112744 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013157 other downstream 3309306 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013139 other downstream 3365457 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013199 other upstream 252883 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013200 other upstream 685562 41662972 ~ 41663088 (-) True XLOC_006867
TCONS_00013201 other upstream 867543 41844953 ~ 41845067 (-) True XLOC_006868
TCONS_00013213 other upstream 1548911 42526321 ~ 42536960 (-) True XLOC_006880
TCONS_00013216 other upstream 1620350 42597760 ~ 42602408 (-) True XLOC_006883

Expression Profile


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