RNA id: TU38891


Basic Information

Item Value
RNA id TU38891
length 449
lncRNA type read_through
GC content 0.48
exon number 2
gene id G34323
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16449680 ~ 16455626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGACAAAACTTCTATCAGTTTGGAAGAATCTCTAGAACCTTGATCCGGCTTGGATCATAAATACAGTCCTCTTCTAATCCACTGAGAACCATTCCACAGTTCGCAGGGACCCACGCAGTGTCATAACCATGTTGATTCCAGGTTTTCTGTAAAGGATGACCCTGACAATTGATCTTCTTCACTTTTCCCACTCGAACACTTAGTTTAAGAATGGCCAGCTGTTGTCCTCCAGCATTTATAGGGTAACGAGAAGCTTTCTCTTTACTCCGGCTCACATAGACTCCTGGCCCGAGCATCCCATCAGAAGAGGGTCTGAATCCTTCACGTTGGATCTTTTGTGCGTTTACCATCGTAGTGCCGTGGTACATGATGTATGTTCTCCGTCCAGGATACCTCTGTATTCCAGTGTCATAATCGTTGTCCCCCATGGCATTCACAGTAACCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38889 lncRNA upstream 590 16448846 ~ 16449090 (+) True G34322
TU38864 lncRNA upstream 140374 16301233 ~ 16309306 (+) True G34297
TU38831 lncRNA upstream 268831 16180508 ~ 16180849 (+) True G34266
TU38355 lncRNA upstream 288682 16158712 ~ 16160998 (+) True G33830
TU38794 lncRNA upstream 430191 16019263 ~ 16019489 (+) True G34229
TU38905 lncRNA downstream 16381 16472007 ~ 16472233 (+) True G34330
TU38844 lncRNA downstream 185716 16641342 ~ 16646222 (+) True G34277
TU38937 lncRNA downstream 209954 16665580 ~ 16672434 (+) False G34357
TU38938 lncRNA downstream 209954 16665580 ~ 16666345 (+) False G34357
TU38939 lncRNA downstream 209954 16665580 ~ 16672434 (+) True G34357
CI01000004_16407140_16438873.mRNA mRNA upstream 10430 16406985 ~ 16439250 (+) True CI01000004_16407140_16438873
CI01000004_16346680_16401924.mRNA mRNA upstream 47756 16346680 ~ 16401924 (+) True CI01000004_16346680_16401924
CI01000004_16221780_16232426.mRNA mRNA upstream 216740 16221780 ~ 16232940 (+) True CI01000004_16221780_16232426
CI01000004_16217935_16218580.mRNA mRNA upstream 231100 16217853 ~ 16218580 (+) True CI01000004_16217935_16218580
CI01000004_16138496_16143438.mRNA mRNA upstream 305563 16138496 ~ 16144117 (+) True CI01000004_16138496_16143438
CI01000004_16467711_16471121.mRNA mRNA downstream 12085 16467711 ~ 16471507 (+) True CI01000004_16467711_16471121
CI01000004_16490931_16555397.mRNA mRNA downstream 35305 16490931 ~ 16555993 (+) True CI01000004_16490931_16555397
CI01000004_16567132_16570668.mRNA mRNA downstream 111506 16567132 ~ 16571368 (+) True CI01000004_16567132_16570668
CI01000004_16579927_16586961.mRNA mRNA downstream 124301 16579927 ~ 16587197 (+) True CI01000004_16579927_16586961
CI01000004_16649360_16654303.mRNA mRNA downstream 193545 16649171 ~ 16654353 (+) True CI01000004_16649360_16654303
TU38340 other upstream 383216 16063415 ~ 16066464 (+) True G33815
TU38784 other upstream 509730 15939357 ~ 15939950 (+) True G34220
TU38554 other upstream 1357711 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 2412780 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3793969 12642754 ~ 12655711 (+) True G32314
TU39001 other downstream 521702 16977328 ~ 17025469 (+) False G34400

Expression Profile