Item | Value |
---|---|
RNA id | TU38844 |
length | 4109 |
lncRNA type | antisense_over |
GC content | 0.45 |
exon number | 2 |
gene id | G34277 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 16641342 ~ 16646222 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU38905 | lncRNA | upstream | 169109 | 16472007 ~ 16472233 (+) | True | G34330 |
TU38891 | lncRNA | upstream | 185716 | 16449680 ~ 16455626 (+) | True | G34323 |
TU38889 | lncRNA | upstream | 192252 | 16448846 ~ 16449090 (+) | True | G34322 |
TU38864 | lncRNA | upstream | 332036 | 16301233 ~ 16309306 (+) | True | G34297 |
TU38831 | lncRNA | upstream | 460493 | 16180508 ~ 16180849 (+) | True | G34266 |
TU38937 | lncRNA | downstream | 19358 | 16665580 ~ 16672434 (+) | False | G34357 |
TU38938 | lncRNA | downstream | 19358 | 16665580 ~ 16666345 (+) | False | G34357 |
TU38939 | lncRNA | downstream | 19358 | 16665580 ~ 16672434 (+) | True | G34357 |
TU38942 | lncRNA | downstream | 26322 | 16672544 ~ 16672767 (+) | True | G34359 |
TU38944 | lncRNA | downstream | 27699 | 16673921 ~ 16674301 (+) | True | G34361 |
CI01000004_16579927_16586961.mRNA | mRNA | upstream | 54145 | 16579927 ~ 16587197 (+) | True | CI01000004_16579927_16586961 |
CI01000004_16567132_16570668.mRNA | mRNA | upstream | 69974 | 16567132 ~ 16571368 (+) | True | CI01000004_16567132_16570668 |
CI01000004_16490931_16555397.mRNA | mRNA | upstream | 85349 | 16490931 ~ 16555993 (+) | True | CI01000004_16490931_16555397 |
CI01000004_16467711_16471121.mRNA | mRNA | upstream | 169835 | 16467711 ~ 16471507 (+) | True | CI01000004_16467711_16471121 |
CI01000004_16407140_16438873.mRNA | mRNA | upstream | 202092 | 16406985 ~ 16439250 (+) | True | CI01000004_16407140_16438873 |
CI01000004_16649360_16654303.mRNA | mRNA | downstream | 2949 | 16649171 ~ 16654353 (+) | True | CI01000004_16649360_16654303 |
CI01000004_16695941_16729500.mRNA | mRNA | downstream | 49411 | 16695633 ~ 16729719 (+) | True | CI01000004_16695941_16729500 |
CI01000004_16812706_16814956.mRNA | mRNA | downstream | 166484 | 16812706 ~ 16815068 (+) | True | CI01000004_16812706_16814956 |
CI01000004_16869205_16944944.mRNA | mRNA | downstream | 222983 | 16869205 ~ 16944944 (+) | True | CI01000004_16869205_16944944 |
CI01000004_17062704_17110319.mRNA | mRNA | downstream | 416482 | 17062704 ~ 17110319 (+) | True | CI01000004_17062704_17110319 |
TU38340 | other | upstream | 574878 | 16063415 ~ 16066464 (+) | True | G33815 |
TU38784 | other | upstream | 701392 | 15939357 ~ 15939950 (+) | True | G34220 |
TU38554 | other | upstream | 1549373 | 15091244 ~ 15091969 (+) | True | CI01000004_15091390_15096502 |
TU37521 | other | upstream | 2604442 | 14023547 ~ 14031127 (+) | True | G33092 |
TU36655 | other | upstream | 3985631 | 12642754 ~ 12655711 (+) | True | G32314 |
TU39001 | other | downstream | 331106 | 16977328 ~ 17025469 (+) | False | G34400 |