RNA id: TU38844



Basic Information


Item Value
RNA id TU38844
length 4109
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G34277
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16641342 ~ 16646222 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAGGCTTAGTGTTAAGTTATATACATAAGAAATGTGAGACTCATGCTGTAATGTTTCGTCTTTATTTAGACAGAAGAAGACAAACTCCTACAGAAGTGCTGTCAGTGTCACATCAGTTTGATCTCCCGAGAAAGCAGTGATGCCTCAAGTCAACAGCTTGATTTTGAAGACTTGTTGAGTACAGCAAAATGAATGTGACATTGAATCACAATCACATTCAGTCTTTTCTCTTGTACACTTGGTGGCACACAGCATCCTCACATGTCAACTCCTGCAAGTGAAATGATCATGAGGTCCAAACGTTTCTCTTGTGACACAGCAGGAATTGTGTGAAAGGATAACAACATTCGTTCAATTATATTTCATGAAAAAATAAAAAGATTTATATGTAATATTGTTGATTCTAACATTGATCTGGTAATTATTATCCACAGAATGACTGTATGCTCACCAGATGAAGTTTGTCTTCTTCTATCCAGTGTTTCCATCCCCGGTTGGCTTTCTCACCTTTCTGTGTGGCCACCAATTTGTCCCCTTCCCAGATCACCAGAGTCTGAATATGTCAAATAAATCTTAAACCACAGGAACTGGCCTGTTACATGGCAAATTATGCTCACTTTTTTTTTTAAATATAAATAAATATTTTTGATCGTCATGATACATAAAAAGACACATTTCCTTAAAGACAGCTTTACACTACTCTTTCTTATTAGTGCTGACTACTGACTAGTCTGACTAGTTCTGGCTAGAATAAATATGTGGTTCATCGATCAGTACTTTAGTACTTTTACTCAAATAAAACTGCACTCTAAAAAATGCTGGGTTACAAATAACCCAAGTTGGGTTAAAAATGGACATATTGGGTTGTTTTGATCCAGCAGTTGGGTTAAATGTTTGATCAACCTGCTTGGGTAGCTTTCTTTAACTCAAGTATTGTTTAAAAAATACTGTATTTCTTGTTTAAAATGAACCCAAAGTATGTTGGAAATTAACATTTATTAATATGTTTAACGAATAATAACTAAACAATAAACATTTATTAAATTGCTTATTAATAAATGTTCACCTTTTGATTATTGTTGTTGCCTCTAGTACTTATGTGTCTGATTTTTAATTTTCAACAAATTTTGGGATCATTTTAATCCAGCCATATAGTATTTTTTAAGCAATAGTTGAGTTAAATAAAACTGCCCAGCACATTGGCAAACATGTAACCCAACAGCTGGGTTTGTCCATTTTCAACCCAACATGGGTTGTTTTTAACCCAACATTTATAAGAGTGTAAAAATGAGTACTGTTACTGGAATAATATTTTAGGGTATCTATACTTTTACTCAAATACTATACTTGTGTACTTCACGCACCACTGGTTTATAGAAATAAATCTGTATTGAGATGACATGAGAAAAAAAAAGACCTTAATGTATTTTGTCCTTTTGGGTAAAAGTTGAGGCTTGTTCTCTATTTGTTTTACTGTAGGTCCATCACTGAACAAACTGACTGAGATCACGGCCTACAGGTCAAGGCTGGGGTAACGACAGGTTAAATAATATTACATCATTAGAGGTGGATCACAGTTATAAAGGAAATTTCTGACCTTCAACGTCCTGTTGTCAAATCCCTTAGTGAATTCTTCCTTCTCGACTCCAACAGTGAAGATCAGCTCATAGCTTTTGAAGGCGCTCTGTGTCTTAATCACAAAGTTATCCCCATCCTGGGTAAAGGTCTTTGTCGGAGTGAGGTGGGCTGCAATCTTCCGGAAGGCAAAGTCGATGTCTATGTATGTGTAAGAATAACAAAATATTTGCAACTTGGCATGGTCATTTCTCATACTTTAAATGGCTTTGCCTAATATTATAAAGTGACGTAATCAGAGTTAGAAAATGGCACAAATAGCTTTTTCTTATTTCTCTGTTGACTTAACCCTTGTAAGCTATTCGTTTGGGATGTACACTCAGGCTGTTGGGGTTAATGAAAACAATAAAATGTGATTTTGTAACAAAATAATGTTTTTTTAAGATTTTATTTTTGGCGTTTTTGTCTTTATTATGATAGAACAGTAAGTGAAGTGGGAGAGAGAGAGATGGGAAGGAATCGGGAAAGGTCCGTGGGCCGGGACTCAAACTCAGGTCGCCCGCTGTCGGCGCTGCCCACGAGGCTATCGGTGTCGACTAATGTCGTTTTTTTTAAAACAAATGTAATTTTACTTACTTTATTAATGTTTTTACTCTACATTTCTGCAGTTTTGGGGGGATATGGAATGCTTTAAATTTATATAAATAAATTAATAAATAAATATTTTTAAATAGTTTTTTTTTCTTCAAAATAACAACCATTTATGTAAAATTCACTTTAAAAAAGACCCACATTTCTAACTTTCATTCATGGAGATAACATGGACAATTTGCCATGGTTTAGTGTTAAGATTTTGCCATCTGGTGGAAAATAATTTTAAAGGTGCAATGTCTAAAGGATATATTGACAGAAATGCAATATAATATACATAACTATGTTTTCAGTGGTGCATACAGACCTTACATAATGAACCGTTATGTTTTTATTACCTTAGAATGAGCCGTTTCTACATACACCGTGGGTCTTTACATGTTAAGTCGCCATTTTGCGCCGCCATGTGTCTACAGTAGCCCTAAACGGACAAACTGCTCTAGAGAGCGCGTTTGCTTGACTGGCTACTCTCTGCTGTCTCAGACGAGGACATCTTTGTCCTGTGTTGGCCACCGTAGCTTCTCTATATTGCAATTCACAACATCACCACTAGATGCCACTAGAATTTACACACTGCACCTTTAAAAGAAATTGAAAAATTATCACTTTATCCAGCAGATGGCTGCAGAGCTCCACTATTTGCTATTGCTATATGACATGCTATTTTATGGAGCCCTGCAAATGACATTCAGGAAAAAATTAGTAGGCTAAATCGTGCACACAATTTACTAATTTATTCCCTCGATTTGCTAAATCGTGTACGGAGGACGAAACCTGCAAAAACAATAAATATATAAATACGCAAATAAATCAATCCATAAATAAATCAATCCACAAAATTATGCATAAATAAATATATAAATAAATAAATGTAATAAATAAATAATACATAAATCCACATATTCCTGTACAAATAAATACATAAATAATTGAATGTGCAAGGATATAAATAAATAAAGAAATAAAACGAATGTTGGGGGGAAATCAAAAAAATTTTAAAGGAAACGAACGCTAAACTGAAAACTTTTTCCTTTTAACCGTTTATTCATTTTTGAATATAGCTCAGTATTTATTTTCCCTTGGCGCAACAGGCTAATGAGAGGGTGTCAATCAAACATCAGAAGGCGGTCTCTATGCCGCCATTGGCTGATCGTTGTAAAAGAGCCATTGGCTGACACTGTTGAAAATAGCAGTACGCTATATATCTGCTGATTATATTCTCTTCAGAGTAGATTCATACACGCTTTAGGTCAGTTAGCAGCTACATTTAATGTGACTGTAGATCCGTTTGTCCTTTTGCTAGTTTTAGGTTTGATATTCGCTTCATTTTTGCCTATATGCTGCTAAAGGGACCGTCTGCAAATTACACTCACAGTCCAAAAATATAAACGTCCAATCATTCATTCAAATGAACGATATTTACAAGGTTATGGTAAATGCTAGTGAGAAGACTGGATTCATTTTACTTATTATGAAATCACAATTATAACAATAAAAGTAACTTTTTGTCCAAAAAAGCAGGGTCTCTAGAGACCCTGAACAGTCTGAGCGTGACTTTTTTCCACACTAACATAAAACCAGATATCATTCCTATTAATTTTTTATTTATAAATCTAAGTGTTGACTTGAGCGTGACTTTTTTCCACACTAACATAAAACCAGATATCATTCCTATTAATTTTTTATTTATAAATCTAAGTGTTGACAGCTTTACAAAGTCTGATGCCATTTGGATCAAGGGAACATTTTTTTTTTTTTAATTTCAGTAAACACAGCAGACATCTGATGAGGCTTACCCAGTGCTTTGAGGTAATTATCAATGTTTTCGCTCGACTCCAGCTCCCATTTTCCAGTGAAATCCACAGCCATGGTTGTGCGATGAG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38905 lncRNA upstream 169109 16472007 ~ 16472233 (+) True G34330
TU38891 lncRNA upstream 185716 16449680 ~ 16455626 (+) True G34323
TU38889 lncRNA upstream 192252 16448846 ~ 16449090 (+) True G34322
TU38864 lncRNA upstream 332036 16301233 ~ 16309306 (+) True G34297
TU38831 lncRNA upstream 460493 16180508 ~ 16180849 (+) True G34266
TU38937 lncRNA downstream 19358 16665580 ~ 16672434 (+) False G34357
TU38938 lncRNA downstream 19358 16665580 ~ 16666345 (+) False G34357
TU38939 lncRNA downstream 19358 16665580 ~ 16672434 (+) True G34357
TU38942 lncRNA downstream 26322 16672544 ~ 16672767 (+) True G34359
TU38944 lncRNA downstream 27699 16673921 ~ 16674301 (+) True G34361
CI01000004_16579927_16586961.mRNA mRNA upstream 54145 16579927 ~ 16587197 (+) True CI01000004_16579927_16586961
CI01000004_16567132_16570668.mRNA mRNA upstream 69974 16567132 ~ 16571368 (+) True CI01000004_16567132_16570668
CI01000004_16490931_16555397.mRNA mRNA upstream 85349 16490931 ~ 16555993 (+) True CI01000004_16490931_16555397
CI01000004_16467711_16471121.mRNA mRNA upstream 169835 16467711 ~ 16471507 (+) True CI01000004_16467711_16471121
CI01000004_16407140_16438873.mRNA mRNA upstream 202092 16406985 ~ 16439250 (+) True CI01000004_16407140_16438873
CI01000004_16649360_16654303.mRNA mRNA downstream 2949 16649171 ~ 16654353 (+) True CI01000004_16649360_16654303
CI01000004_16695941_16729500.mRNA mRNA downstream 49411 16695633 ~ 16729719 (+) True CI01000004_16695941_16729500
CI01000004_16812706_16814956.mRNA mRNA downstream 166484 16812706 ~ 16815068 (+) True CI01000004_16812706_16814956
CI01000004_16869205_16944944.mRNA mRNA downstream 222983 16869205 ~ 16944944 (+) True CI01000004_16869205_16944944
CI01000004_17062704_17110319.mRNA mRNA downstream 416482 17062704 ~ 17110319 (+) True CI01000004_17062704_17110319
TU38340 other upstream 574878 16063415 ~ 16066464 (+) True G33815
TU38784 other upstream 701392 15939357 ~ 15939950 (+) True G34220
TU38554 other upstream 1549373 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 2604442 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3985631 12642754 ~ 12655711 (+) True G32314
TU39001 other downstream 331106 16977328 ~ 17025469 (+) False G34400

Expression Profile