RNA id: TU38997


Basic Information

Item Value
RNA id TU38997
length 978
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G34400
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16971995 ~ 17025976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGTTCAATCCAAACATTATTATATTTGTAGGCCTGATACTGAAAAGCCTGAAGATTTCTGCTGACAGACTCATCTGAGCTTCTTCCTCCTGTTCCGCCTTTAAATAAAACTAAACCATCATTTGTCTGAATACTAAAGCAACATTAATCATTCAATATCACATGTTTCTAACACACATGCTGCTTTATTTCATTGTAAAGTCTGAGTCTCTTCCATCTGTATGAAACACATTTACACACATAATCACACATTTATTTCTCCTCATAGACACAGTAGTGAGACTCTTCTGTGGATCACCTGATGATTACCGCTCCTCTCATGATGATTTCAGAGATTACTATCTACTCTGTAAGGTGAAACAGAAGACAAAACAATTAGTGTTCAGTGGAACAAAGTGCAAATTAGTTACTATATTTCAATTACTGTTTTTTAAGTAAAAAGAAGATACATTAAATTCCTGTAATCAGATTAATTACTGACTTACATGATCCTGCAGAGATATTTGTGTTTTAAATATAATACATTTAAATCATGAATCATGTTGATCTGTTTGTGTGTTTGTGTTGGTGTGACTCCTATTGAGTGACTGTAAAGAAGAAACTAATGAGTGTACGGCGTATGAATAAACCACAGGGAGCAAATACAAATGATGTTCTGAATTAAAACACAAACCTTTAGTTAAAGCCATTTGTCCTCTAGTTTAAACATGTTTGTAGGGCTCTTAGTAAATAACTGAAAGTAAAGTGAGTGTAAATTAGTGTGACGTGTTGCTTGTCAAAGTAAAAACACACCAGAGACAGAGACATTTCTCATGTGAGGCTGGACGGCTGTGAGCTGAAGCTGAACGCACTGATTTTAGCAGGAGTGCAGCGTTTTCCTACAATCTGACCAAGTCTATTTTCAAACTGAAATGATTCACTACTGACACAGTTAATAAAGCAGGTGTTGTTGTATAAAGCTGTGACAGTGTGCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38976 lncRNA upstream 15821 16928474 ~ 16956174 (+) False G34391
TU38977 lncRNA upstream 15821 16954344 ~ 16956174 (+) True G34391
TU38989 lncRNA upstream 19376 16950871 ~ 16952619 (+) False G34399
TU38991 lncRNA upstream 19376 16950871 ~ 16952619 (+) True G34399
TU38945 lncRNA upstream 297181 16674505 ~ 16674814 (+) True G34362
TU38993 lncRNA downstream 1072 17012967 ~ 17025469 (+) False G34400
TU38994 lncRNA downstream 1072 17012967 ~ 17015250 (+) True G34400
TU39031 lncRNA downstream 39668 17051563 ~ 17052535 (+) False G34427
TU39033 lncRNA downstream 39668 17051563 ~ 17051943 (+) True G34427
TU39045 lncRNA downstream 109560 17121455 ~ 17127389 (+) False G34437
CI01000004_16869205_16944944.mRNA mRNA upstream 27051 16869205 ~ 16944944 (+) True CI01000004_16869205_16944944
CI01000004_16812706_16814956.mRNA mRNA upstream 156927 16812706 ~ 16815068 (+) True CI01000004_16812706_16814956
CI01000004_16695941_16729500.mRNA mRNA upstream 242276 16695633 ~ 16729719 (+) True CI01000004_16695941_16729500
CI01000004_16649360_16654303.mRNA mRNA upstream 317642 16649171 ~ 16654353 (+) True CI01000004_16649360_16654303
CI01000004_16579927_16586961.mRNA mRNA upstream 384798 16579927 ~ 16587197 (+) True CI01000004_16579927_16586961
CI01000004_17062704_17110319.mRNA mRNA downstream 50809 17062704 ~ 17110319 (+) True CI01000004_17062704_17110319
CI01000004_17214619_17236647.mRNA mRNA downstream 202724 17214619 ~ 17236674 (+) True CI01000004_17214619_17236647
CI01000004_17320843_17323478.mRNA mRNA downstream 308597 17320492 ~ 17323777 (+) True CI01000004_17320843_17323478
CI01000004_17368205_17412619.mRNA mRNA downstream 355752 17367647 ~ 17412936 (+) True CI01000004_17368205_17412619
CI01000004_17419825_17424299.mRNA mRNA downstream 407930 17419825 ~ 17424743 (+) True CI01000004_17419825_17424299
TU38340 other upstream 905531 16063415 ~ 16066464 (+) True G33815
TU38784 other upstream 1032045 15939357 ~ 15939950 (+) True G34220
TU38554 other upstream 1880026 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 2935095 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 4316284 12642754 ~ 12655711 (+) True G32314

Expression Profile