RNA id: TU39000


Basic Information

Item Value
RNA id TU39000
length 732
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G34400
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16971995 ~ 17025976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAGCTCGCCTTTATTTAAGAAGGAGAATCTCTCTGCATCTGCTCATGTAGCTTCAATAATACAACAGACAAGTGAACTTTTCAAACAAAAACAATGAAAGACACACAAATGCTGTTAACTGGTAAAATGTTTAGTTGGTCTGAATAGAAGAGACTCCATCCACAGAACAAAGACAATATACTGTATATCTGTGCGTTAACAACAGACACATAGATAACTTAATATAAAATAAAACAGAAAAATAAAAAAGATAATGTAAATGCTTGATATATTTATTAGACTATTAGAACATTAGACTTGATATATATATATATATATTTTGATGCATTTATGTGCTATACTTGACAATCACGTTTATGATTAAAAAACATTTTAATGATTATGGATGAGTTCAATCCAACATTATTATATTTGTAGGCCTGATACTGAAGAGCCTGAAGATTTCTGCTGACACTGCTGACTCCTTTAAATAAAACAAAACCATCATTTGTCTGAATATTAAAGCAACATTAATCATTCAATATCACATGTTTCTAATACACATGCTGCTTTATTTCATTGTAAAGTCTGAGTCTCTTCCATCTGTATGAAACACATTTACACATTAATCACACATTTATTTCTCCTCATAGACACAGTAGTGAGACTCTTCTGTGGATCACCTGATGATTACTGCTCCTCTCATGATGATTTCAGAGATTTAAACCATGATGTAAACAATCCACCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38976 lncRNA upstream 51079 16928474 ~ 16956174 (+) False G34391
TU38977 lncRNA upstream 51079 16954344 ~ 16956174 (+) True G34391
TU38989 lncRNA upstream 54634 16950871 ~ 16952619 (+) False G34399
TU38991 lncRNA upstream 54634 16950871 ~ 16952619 (+) True G34399
TU38945 lncRNA upstream 332439 16674505 ~ 16674814 (+) True G34362
TU38996 lncRNA downstream 450 17011691 ~ 17025976 (+) False G34400
TU38993 lncRNA downstream 1726 17012967 ~ 17025469 (+) False G34400
TU38994 lncRNA downstream 1726 17012967 ~ 17015250 (+) True G34400
TU39031 lncRNA downstream 40322 17051563 ~ 17052535 (+) False G34427
TU39033 lncRNA downstream 40322 17051563 ~ 17051943 (+) True G34427
CI01000004_16869205_16944944.mRNA mRNA upstream 62309 16869205 ~ 16944944 (+) True CI01000004_16869205_16944944
CI01000004_16812706_16814956.mRNA mRNA upstream 192185 16812706 ~ 16815068 (+) True CI01000004_16812706_16814956
CI01000004_16695941_16729500.mRNA mRNA upstream 277534 16695633 ~ 16729719 (+) True CI01000004_16695941_16729500
CI01000004_16649360_16654303.mRNA mRNA upstream 352900 16649171 ~ 16654353 (+) True CI01000004_16649360_16654303
CI01000004_16579927_16586961.mRNA mRNA upstream 420056 16579927 ~ 16587197 (+) True CI01000004_16579927_16586961
CI01000004_17062704_17110319.mRNA mRNA downstream 51463 17062704 ~ 17110319 (+) True CI01000004_17062704_17110319
CI01000004_17214619_17236647.mRNA mRNA downstream 203378 17214619 ~ 17236674 (+) True CI01000004_17214619_17236647
CI01000004_17320843_17323478.mRNA mRNA downstream 309251 17320492 ~ 17323777 (+) True CI01000004_17320843_17323478
CI01000004_17368205_17412619.mRNA mRNA downstream 356406 17367647 ~ 17412936 (+) True CI01000004_17368205_17412619
CI01000004_17419825_17424299.mRNA mRNA downstream 408584 17419825 ~ 17424743 (+) True CI01000004_17419825_17424299
TU38340 other upstream 940789 16063415 ~ 16066464 (+) True G33815
TU38784 other upstream 1067303 15939357 ~ 15939950 (+) True G34220
TU38554 other upstream 1915284 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 2970353 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 4351542 12642754 ~ 12655711 (+) True G32314

Expression Profile