RNA id: TU38994


Basic Information

Item Value
RNA id TU38994
length 372
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G34400
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16971995 ~ 17025976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTATAATGATACTAACTGTAGTTTCTCCAGCTTGAATTGTGGGTTCATCAGTAGATCACTGAGGTTTTTCACTCCAGAGTCTCCTAGTTTATTCCCGCTCAGGTCCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGGATGACACACTGTTTCTCTGTAATTCTGCATCCACTCAGACTGAAGACAGAGAAAAACAATAGTTCACATCTATGATGATCATCTTCTTGAAGAGCTTCAGCAGCATTTAGTTTCCAATAGTCTGTTTTGAAACCCAGTTACACTAGTTCTGTGTGCTGAAGATACTGTTTCTACTCTTTCATTTTAACTATTTATTTGATGTTTCTATTCTTTATTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38997 lncRNA upstream 1072 16971995 ~ 17011895 (+) False G34400
TU39000 lncRNA upstream 1726 17007253 ~ 17011241 (+) False G34400
TU38992 lncRNA upstream 4967 16971995 ~ 17008000 (+) False G34400
TU39002 lncRNA upstream 4967 16971995 ~ 17008000 (+) False G34400
TU38977 lncRNA upstream 56793 16954344 ~ 16956174 (+) True G34391
TU39031 lncRNA downstream 36313 17051563 ~ 17052535 (+) False G34427
TU39033 lncRNA downstream 36313 17051563 ~ 17051943 (+) True G34427
TU39045 lncRNA downstream 106205 17121455 ~ 17127389 (+) False G34437
TU39047 lncRNA downstream 106205 17121455 ~ 17129497 (+) True G34437
TU40043 lncRNA downstream 269236 17284486 ~ 17285053 (+) True G35266
CI01000004_16869205_16944944.mRNA mRNA upstream 68023 16869205 ~ 16944944 (+) True CI01000004_16869205_16944944
CI01000004_16812706_16814956.mRNA mRNA upstream 197899 16812706 ~ 16815068 (+) True CI01000004_16812706_16814956
CI01000004_16695941_16729500.mRNA mRNA upstream 283248 16695633 ~ 16729719 (+) True CI01000004_16695941_16729500
CI01000004_16649360_16654303.mRNA mRNA upstream 358614 16649171 ~ 16654353 (+) True CI01000004_16649360_16654303
CI01000004_16579927_16586961.mRNA mRNA upstream 425770 16579927 ~ 16587197 (+) True CI01000004_16579927_16586961
CI01000004_17062704_17110319.mRNA mRNA downstream 47454 17062704 ~ 17110319 (+) True CI01000004_17062704_17110319
CI01000004_17214619_17236647.mRNA mRNA downstream 199369 17214619 ~ 17236674 (+) True CI01000004_17214619_17236647
CI01000004_17320843_17323478.mRNA mRNA downstream 305242 17320492 ~ 17323777 (+) True CI01000004_17320843_17323478
CI01000004_17368205_17412619.mRNA mRNA downstream 352397 17367647 ~ 17412936 (+) True CI01000004_17368205_17412619
CI01000004_17419825_17424299.mRNA mRNA downstream 404575 17419825 ~ 17424743 (+) True CI01000004_17419825_17424299
TU38340 other upstream 946503 16063415 ~ 16066464 (+) True G33815
TU38784 other upstream 1073017 15939357 ~ 15939950 (+) True G34220
TU38554 other upstream 1920998 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 2976067 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 4357256 12642754 ~ 12655711 (+) True G32314

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU219191 False 305 lncRNA 0.37 2 NC_056720.1 1708438 ~ 1711787 (+)