RNA id: TU48824


Basic Information

Item Value
RNA id TU48824
length 273
lncRNA type sense_over
GC content 0.58
exon number 1
gene id CI01000006_02689895_02705309
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2689655 ~ 2708567 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAAGTGAACAGCGGGAAAGAGAGGAGGTGAGGCGGTGGGTGCGAAGAGTGACTGAAGGCAGAAATGAAATGAAAATGTTGAGATTGGGATGTAAAACTGCAAAGTGGCGTGAACAGATAAGGGACGGAGAGAGACAGGGAGAGAAGGAGGAGGAAGATGGTGTGAGTAGATCCAATCTCCAGCCCTGTCAATCAGAGCCGCAGTGTTTACTGCCCACACATTCCTGCCCCTTTTACAGGCATTACACATGCAGCGAAGAGTGTCTCGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48813 lncRNA downstream 8445 2677722 ~ 2681500 (-) True G42986
TU48816 lncRNA downstream 18232 2670283 ~ 2671713 (-) True G42987
TU48754 lncRNA downstream 109801 2523776 ~ 2580144 (-) False G42934
TU48752 lncRNA downstream 131968 2523776 ~ 2557977 (-) False G42934
TU48729 lncRNA downstream 203199 2486225 ~ 2486746 (-) True G42913
TU48834 lncRNA upstream 19307 2709524 ~ 2710052 (-) True G43005
TU48915 lncRNA upstream 166751 2856968 ~ 2859398 (-) False G43084
TU48917 lncRNA upstream 166833 2857050 ~ 2859398 (-) False G43084
TU48916 lncRNA upstream 166918 2857135 ~ 2859398 (-) True G43084
TU48927 lncRNA upstream 193608 2883825 ~ 2980614 (-) True G43092
CI01000006_02648355_02660501.mRNA mRNA downstream 29144 2646408 ~ 2660801 (-) True CI01000006_02648355_02660501
CI01000006_02634636_02643446.mRNA mRNA downstream 46499 2634288 ~ 2643446 (-) True CI01000006_02634636_02643446
CI01000006_02624725_02626124.mRNA mRNA downstream 63169 2624455 ~ 2626776 (-) False CI01000006_02624725_02626124
CI01000006_02617160_02621622.mRNA mRNA downstream 68323 2617130 ~ 2621622 (-) True CI01000006_02617160_02621622
CI01000006_02516145_02524371.mRNA mRNA downstream 164136 2516129 ~ 2525809 (-) True CI01000006_02516145_02524371
CI01000006_02720061_02749853.mRNA mRNA upstream 29750 2719967 ~ 2749874 (-) True CI01000006_02720061_02749853
CI01000006_02766733_02767600.mRNA mRNA upstream 76148 2766365 ~ 2768738 (-) True CI01000006_02766733_02767600
CI01000006_03018948_03029493.mRNA mRNA upstream 328182 3018399 ~ 3031161 (-) True CI01000006_03018948_03029493
CI01000006_03043665_03066360.mRNA mRNA upstream 353021 3043238 ~ 3067159 (-) True CI01000006_03043665_03066360
CI01000006_03188826_03200931.mRNA mRNA upstream 498560 3188777 ~ 3200931 (-) True CI01000006_03188826_03200931
TU48776 other downstream 63759 2569774 ~ 2570203 (-) False G42952
TU48777 other downstream 63759 2569774 ~ 2570195 (-) False G42952
TU48778 other downstream 63759 2569774 ~ 2570192 (-) True G42952
TU48753 other downstream 107739 2568913 ~ 2582206 (-) True G42934
TU48637 other downstream 394947 2284832 ~ 2290690 (-) True G42837
TU48938 other upstream 218234 2908451 ~ 2933984 (-) True G43102
TU49430 other upstream 1662293 4352510 ~ 4355428 (-) True G43549
TU49494 other upstream 1869292 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU51020 other upstream 4283007 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other upstream 4283233 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736

Expression Profile