RNA id: CI01000006_03734862_03735227.mRNA



Basic Information


Item Value
RNA id CI01000006_03734862_03735227.mRNA
length 1092
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000006_03734862_03735227
representative False

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3734554 ~ 3736035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAATACATGCGGGTTTTATGAAATGCTCATATATAGTCTGTGTGGTAGGAGATCCGCTTATTTGTCAATAATGCATATTTATTTCGAGGGTATAGCTGAAACTTACAACAAAGTATGATATCTGAAGTTTTTTTTTTTTTTTTCGTTATGTTTGTTTTTTAATACGTTCAGTGTGTAGTATTTTCTTTTAACTTGTAGTATTAAGAAATCATGACTTTTAATACAAGATCTTGTTTCTCCTCTTTAAGCCATTGAATAGAGTCAACTTGAATTCCTGCAACCCTCTCTTAATACAAAACAACAATGTCGTCAACATCACAAAAACACAAGGACTTTGTGGCAGAGCCCATGGGGGAGAAGTCTGTGAATGCACTAGCAGGAATTGGGGAAGTTCTAGGAAAGAGATTGGAAGAGAAGGGCTTTGACAAGGCATATGTTGTCCTAGGACAGTTTCTGGTACTGAGGAAAGATGAGGAGTTGTTTCGGGAATGGTTGAAAGATACATGTGGAGCCAACACCAAACAGCAAGGCGACTGTTATGGCTGTCTGCGAGAGTGGTGTGACTCTTTCCTGTAGTTGACTCTAAAGTTGTTGTATCTTCATCCCCCCCCCATGTATACTGAATACATTTACCTCACACTATCAATTAGACTTTTTTGACATTTATTTTTGGATGTATTAATATTAACTCTTAGCCCAGAATTGTAGAAGCACTAGAAGGTCTCTAGATGGGTACACTTGTTAAATTATCACTGCTTCTTCTTTTTTCAAACATCATTCACACTGGATCTTTAGTTTTCGTGGAATGATACAAATTATCCAAAAATCCACTCATCATATGCAGTTCGATCCCAGACTGTACATATGTGCATACACCAGTAGTGCAAATACACATTTGCAGGGCACAACACAGATTTCACTTTGTTTATGATGCCATTTGCAGGTTTTAACTGGCAATGTGCCGCACTGCTATTAAGCTTTTTAAGGTTTGTGAACTTGTCACTGTTCTCTATATGTATTCTCCAAAGGATCCCATGCTGTGATATTGCCATATGGTTTTATGCTCCCCAACCCTTAAATTGCCTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU47143 lncRNA upstream 8055 3725866 ~ 3726499 (+) True G41523
TU47113 lncRNA upstream 12885 3703620 ~ 3721669 (+) True G41498
TU47297 lncRNA upstream 90315 3642819 ~ 3644239 (+) True G41672
TU47262 lncRNA upstream 166579 3567598 ~ 3567975 (+) True G41637
TU47260 lncRNA upstream 174475 3559768 ~ 3560079 (+) True G41635
TU47168 lncRNA downstream 4456 3740194 ~ 3742496 (+) True G41548
TU47341 lncRNA downstream 40867 3776605 ~ 3776903 (+) True G41716
TU47357 lncRNA downstream 95166 3830904 ~ 3831126 (+) True G41729
TU47360 lncRNA downstream 104013 3839751 ~ 3840006 (+) True G41732
TU47377 lncRNA downstream 114055 3849793 ~ 3850026 (+) True G41743
CI01000006_03607868_03614573.mRNA mRNA upstream 119619 3607255 ~ 3614935 (+) True CI01000006_03607868_03614573
CI01000006_03548703_03554763.mRNA mRNA upstream 179791 3548703 ~ 3554763 (+) True CI01000006_03548703_03554763
CI01000006_03483581_03526564.mRNA mRNA upstream 207352 3483581 ~ 3527202 (+) True CI01000006_03483581_03526564
CI01000006_03446979_03447865.mRNA mRNA upstream 286638 3446979 ~ 3447916 (+) True CI01000006_03446979_03447865
CI01000006_03441003_03442001.mRNA mRNA upstream 291599 3440656 ~ 3442955 (+) True CI01000006_03441003_03442001
CI01000006_03744756_03759381.mRNA mRNA downstream 8586 3744324 ~ 3759825 (+) True CI01000006_03744756_03759381
CI01000006_03760594_03770397.mRNA mRNA downstream 24537 3760275 ~ 3770797 (+) True CI01000006_03760594_03770397
CI01000006_03808166_03810807.mRNA mRNA downstream 72347 3808085 ~ 3810807 (+) True CI01000006_03808166_03810807
CI01000006_03837017_03839129.mRNA mRNA downstream 101279 3837017 ~ 3839251 (+) True CI01000006_03837017_03839129
CI01000006_03858455_03862082.mRNA mRNA downstream 122717 3858455 ~ 3862368 (+) True CI01000006_03858455_03862082
TU47211 other upstream 895133 2836167 ~ 2839421 (+) True G41591
TU47032 other upstream 1073984 2645662 ~ 2660570 (+) True G41424
TU46746 other upstream 2038733 1692065 ~ 1695821 (+) True G41170
TU46269 other upstream 3241528 488875 ~ 493026 (+) True G40768
TU46261 other upstream 3251219 480632 ~ 483335 (+) False G40767
TU47686 other downstream 1381468 5117206 ~ 5124149 (+) True G41996
TU49835 other downstream 2034351 5770089 ~ 5771775 (+) True G43896
TU49806 other downstream 2372746 6108484 ~ 6108637 (+) True G43869
TU49812 other downstream 2386297 6128606 ~ 6128675 (+) True G43873
TU50906 other downstream 3431051 7169829 ~ 7170534 (+) True G44782

Expression Profile