RNA id: CI01000006_07214841_07222648.mRNA


Basic Information

Item Value
RNA id CI01000006_07214841_07222648.mRNA
length 2764
RNA type mRNA
GC content 0.46
exon number 16
gene id CI01000006_07214841_07222648
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7214841 ~ 7222817 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTTCTTCTATATGGATCGTACTTCCATTCCCCTCGTCCTACTGTGCAGCCTGGCTTTATTTACCCCTATTACGGGATGCTTCTGTGACCACTACCCATGGAGTTCATGGTCCTATTGCACCAAAACCTGTGACTCTGGAACCCAAGCACGTACAAGGGCTGTGCGCCATGATGAGCACTGGACAAAAAACAATTGCTTCCAGCTGTGTCAAACACAGGAGACTAGGGTGTGTAATGCTGAGGCCTGTACTATAAACTGCCAGCTGACTGAATTTGGACCCTGGTCAGAGTGCTCGCCGTGTGCCAAAAAATCTGTAAGAAGATGTATAAATGCAACTCTGCAGTGCAACGATCAGGACGACTGTGGGGACAACTCTGACGAGAGAGACTGTGGGCAAACCAAAAAAGTGTGTGCAAGTGAACGGAGATTTGCTTTCATTCCTGGAGCAGATCTGATTGGTTATGGATTTGATGCTGCTGCAGAGCAGATGAGAGGCACTGTTCTGGACAGCTCATTCATGGGGGGTGAATGCACTCTACAAAGACATAAGAGGAACTACTACAGAATCCCTGCCAACATTGAAAGATATGAAATCAAGGTAGAAAATCTTGAAGATTTTCAAGTGAAAGAAGTCAAACCCCAAAAAGTCAACTTGGCCAAAGAATCAAATCAATTTTTTAAAGAGGCCATGAAAATATCTCAACAAAAGGACTCTGAGTTTTTCAGGGTGCATCAGGTTGTTGCCACATCAACATTCAGAATGAAATCCTCTGACCTCTACTTATCAGACCCTTTCCTTCAGTTTCTAAACAGTCTACCACTGGAATATAACTATGCCCTTTACAGACAGATCTTCCAGTTGTTTGGGACACATTATTTCAGCTCTGGGACATTAGGGGGAAAGTATGACCTCCTTTTCCAATATGATCGAGAAGAACTGAAAACCTACGGTTTGACAGAAGCAGAAATGAACAGTTGTTTTAGTCAGGATTCTACCATCATCGCTTTATTCTATAATAGAATATCACATAGTTCCACCTGTGGGAAAAATACATTAAAAACTGAATATGAAGGGTCAATTGTAAAAGCTTCAGAGAAGTGTATTACATCTGTGCAAGGAGGTAGAGCTGAATTTACAGCAGCCCTGGCCTGGGAGAAGAGGGGTGTATCGCCAGACAGCACTACATACCAGAATTGGATCAAATCTACAATTGACAATCCAACTGTTATAGATTTTGAGCTTTTGCCTTTAGTAAATTTGGTGCGGGGCTTCCCTTGTGCTGTGACAAAGAGACGGCATCTTCATAAGGCGCTGATGGAGTACCAGACTGAATTTGACTCTTGCAAATGTGCCCCCTGCCCAAACAATGCCCGGCCAGCTCTTTCTGGAACAGAGTGCATTTGTATTTGCCAGACCGGGACCTATGGACCAAACTGCGAGAAACGAGCACCAGACTATACTGCAGATGAAGTTGATGGGCGCTGGAGCTGCTGGAGCTCTTGGAGTACTTGTGACGCCACCTTGAAGAGGCATCGCTCTCGTACCTGTAACAACCCTGCACCCCAGCGGGGCGGCATACCCTGCCAGGGCCCTGGGAAGCAGGAGGAGGAGTGTACCATCTCTATTTTCCAGGAGCAAAATGTGTGCATTAATGATGATGACTTTGTGACTGAAGGGTCCCGTGAGAGCCAGCTGCCCCCTGGAGCTTCTGGCTGTCCAAAACCCCGTCCCCCTGCCAACAGCCACCTGAGAATCAACAAACGGCAATACGATTATGGAGATCATGAGGAGTTTGTTTGCTTTACTGGTTTTGAGCTGGACGGATACCAGCTTATTCATTGTTTGCCGGATGGTACTTGGGAGAAGCCCAAAGGACAGTGCATTAAAAATGTTTGCTCCAAACCCACAGTGCCTGACGGCATGAAGATATACCCAAACAAAATGGAGTATAAAGTAGGAAGTGACATCATGCTGGCCTGTTTAGAAAGTGACATGAGTCCCTCAGGGCGTCAGTCTTACTCATGTGGGAAGAGTCTTGTCTGGGAGCCAAGCATTCCACAGGACATACACTGCAAGATTGATAAACCCTTCATACCAGACAGCAGCTGTAAACTTGGAGAGATGCATGATGGGACTAAATGCATCTGCATGTCCAAAGAGAGATGCAGAAATTATAGAACAGACTTGTGCATTTTTGACGCAGACAAAGAGACTGCCATTATGATGTCCCTCTGTGCTTTTCATGCTGACCGTTGTCATGGAGACCGATTATACTTTATGAATAATGGGCCATGCAAAACTGACGCAGGCAGTCTGGACTGGGCCAAATTCAGGGCCAGTGTATCTGAGCAGAGCACAGTGCAGGAGCCCTGCGGTTCAGACACCTGTTACGAGTGGGAGACCTGCTCAGAGTCAAATACATGTGAGTGCAAAATCCCCAGAGATTGTTCAAAGGATGGGAAGCAAATGTACTGCCTGAAAATTGTGAGAACGCAAAGCACACGGAGCATGAATCTCTGCTTCATGGCTGCCATGAAGTGCAGCAGGATAGAGTTTGAGCTTCTGCATGAAGGTCCTTGTGCAAGTTCTTAATTGTGCACCAATCTTGCTGTAGAAATTTTCACAGCTGAAATGCTCACAGGTTTGCACCCATTATTGATTTGTACAGAAAACGCATTGATGTTTTATAGTCACTCACAGCATGCTATGCAGTAATATTTTGTGCATTAGAGCAATCTGGATATTGATGTGGAACAGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50948 lncRNA upstream 41394 7173217 ~ 7173447 (+) True G44821
TU50918 lncRNA upstream 50134 7162480 ~ 7164707 (+) True G44794
TU50945 lncRNA upstream 150674 7063827 ~ 7064167 (+) True G44818
TU50944 lncRNA upstream 151057 7063521 ~ 7063784 (+) True G44817
TU50904 lncRNA upstream 219978 6992868 ~ 6994863 (+) True G44780
TU50917 lncRNA downstream 105 7222922 ~ 7312257 (+) True G44793
TU50983 lncRNA downstream 92008 7314825 ~ 7315134 (+) True G44851
TU50984 lncRNA downstream 92394 7315211 ~ 7315553 (+) True G44852
TU50985 lncRNA downstream 92904 7315721 ~ 7315980 (+) True G44853
TU50986 lncRNA downstream 93354 7316171 ~ 7316492 (+) True G44854
CI01000006_07208843_07212249.mRNA mRNA upstream 2003 7208480 ~ 7212838 (+) True CI01000006_07208843_07212249
CI01000006_07203185_07207649.mRNA mRNA upstream 7181 7203185 ~ 7207660 (+) True CI01000006_07203185_07207649
CI01000006_07194003_07196123.mRNA mRNA upstream 18486 7193722 ~ 7196355 (+) True CI01000006_07194003_07196123
CI01000006_07167131_07168925.mRNA mRNA upstream 45916 7166778 ~ 7168925 (+) False CI01000006_07167131_07168925
CI01000006_07121418_07160572.mRNA mRNA upstream 54016 7121169 ~ 7160825 (+) True CI01000006_07121418_07160572
CI01000006_07243073_07247934.mRNA mRNA downstream 20256 7243073 ~ 7248022 (+) True CI01000006_07243073_07247934
CI01000006_07249033_07250723.mRNA mRNA downstream 25621 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07254728_07260352.mRNA mRNA downstream 31444 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07328380_07352585.mRNA mRNA downstream 105166 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07458458_07460310.mRNA mRNA downstream 235296 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
TU50906 other upstream 44307 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1086166 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1105253 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1443066 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 2090692 5117206 ~ 5124149 (+) True G41996
TU51004 other downstream 133535 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 399174 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 661050 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 796525 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 936699 8159516 ~ 8159528 (+) False G45351

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038467 False 3024 mRNA 0.45 18 NC_007132.7 20915460 ~ 20932603 (-)