RNA id: CI01000006_07243073_07247934.mRNA



Basic Information


Item Value
RNA id CI01000006_07243073_07247934.mRNA
length 1846
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000006_07243073_07247934
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7243073 ~ 7248022 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAGCAGATGCAGTGAAACTAAGACTAATTAAAAACTTGACATTCCTGTTATTTTTTTCTGGTCCATCAGACTTCTTGGAAACATGCCTTAAAGCAAGTCAAATTTCAACTTTGCCTCATCTGACTGGATGTTTTTCTCGAGAGCTGTTGACTTTCCGTTGTCAGTGGGAGACTCGATCCTTACAGAACACCACAGAACTTGAGGATCTGAGACTTTTCTACATATTAGAAAAGGATTCTAAGAAAAGTGAGAGAAAATGGAATGAATGTCCAAGTTACAGCTCCTCGAGGAATGAATGCTACTTTGATTCCAGTAATACTATAATATGGTACCCTTATGCGATCCAGCTGCGTTCACACTCTCTTGGCGTTGTTTATGATGAAATGTCTTTCAACGTGGAGGACATTGTGTTTCCAGACCCACCTGTAGGACTGAACTGGACTCTTTTGAGTATGGGTTCAACTGGTTTAATCTGTGATGTGGTTGTGAGCTGGGATCCACCTCCATCTGCTGCAGAGAATGTGAAGATAGGATGGATGCTGCTGGTATACGAGACACAGTACAGAGAAAAGGGTTCAGACCAGTGGAACTCACTGGATAATGGCAAAGATACGCAGGCGTATGTCTATGGTCTCCGCAGCAACACCGAATATGAAGTCAGAGTCAGGTCAAAAATGAGAGGCTACAACTTTGGTGTCTTCAGTGACTCCATCTTCATACTCATTCCTAACAAAGAAACAAGAATTCCTATTACAGCTGTGCTTGTCTTTGCCACTGTTGGTATCGCAATTATCTTGATGCTGATTGTAGTTTCACGTCAACAAAAGCTAATGGTGATTTTCCTGCCGCCAATACCTGGACCAAAAATCAAAGGGATTGACCCTGTGCTTTTACAGAAAGGCCAGCTGTGTGAATTCACATCAATCTTAGGCACCCACCCAGGCTTGCGGCCAGAACTGTACAGCAATGACCCATGGGTAGAGTTCATAGAGGTGGACATCGACGAACCACACGAGAGCCAAGAGGAGCTCCTTATCGCCGACTCTCCGGTCTCTGAATCGCCTCAAATGTCCAGTAGTTTCAGGGATGATGACTCGGGTCGGGCTAGCTGCTGTGATCCGGACCTGTCGGATCACGATCAGACTGATCTACATCACCCTTCAACCAGTAGCCATGACGGTTTCCACCCGTTATCACGTACACACTCTGGGCCACCGCAACCTGCGGCTGTCTGTCCACATAACACAACCTGGTCTAACAGCCTTTACTCACAGGTGAGTGACGTCACCCAGCGTGGGGAAGCTGTGCTTTCTCCGGAAGAGCGGGAAAGAATGAAAACCTGTCATAATGATATTCAGAAGGATAAAGACAACAATAAGAAAATACAACAGTTGGTGGTGATCCCTGATGAAAGAGGCTACACCTCCGAGCTTGTTGCCAGTGCAATCAGTGACCACCACAATAAGCCAAACCTACCTACGACAGACCAATCACAGAGTCAAGAACAACACGGTGCATTCAGAGACATTCAAAACCTGAGCACTGAGACAAACACGTCCTCTCTGTCCACTGCATTTCCCACCCTTGAAAAGCCTACAAGTCCAGAGTACACTATGGTAGATGGGGTGGACTGGAAAAACAGTCTCTTCCTGAAACCAAATACACCAACCACCCAACAGAAGGCAGCAGTTAAGACTTTGCCCACTCCTGAAGGATACTTGACTCCTGACTTACTCGACAACATTACCCCTAACTAAAAGTGGAGTACATTTGCTCTTTGTGACATATCTGACTTGGTTAGCCAACACCGAACAAGACGTGTGATCCATGAGGACGAATCTTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50948 lncRNA upstream 69626 7173217 ~ 7173447 (+) True G44821
TU50918 lncRNA upstream 78366 7162480 ~ 7164707 (+) True G44794
TU50945 lncRNA upstream 178906 7063827 ~ 7064167 (+) True G44818
TU50944 lncRNA upstream 179289 7063521 ~ 7063784 (+) True G44817
TU50904 lncRNA upstream 248210 6992868 ~ 6994863 (+) True G44780
TU50983 lncRNA downstream 66803 7314825 ~ 7315134 (+) True G44851
TU50984 lncRNA downstream 67189 7315211 ~ 7315553 (+) True G44852
TU50985 lncRNA downstream 67699 7315721 ~ 7315980 (+) True G44853
TU50986 lncRNA downstream 68149 7316171 ~ 7316492 (+) True G44854
TU50987 lncRNA downstream 70061 7318083 ~ 7318298 (+) True G44855
CI01000006_07214841_07222648.mRNA mRNA upstream 20256 7214841 ~ 7222817 (+) True CI01000006_07214841_07222648
CI01000006_07208843_07212249.mRNA mRNA upstream 30235 7208480 ~ 7212838 (+) True CI01000006_07208843_07212249
CI01000006_07203185_07207649.mRNA mRNA upstream 35413 7203185 ~ 7207660 (+) True CI01000006_07203185_07207649
CI01000006_07194003_07196123.mRNA mRNA upstream 46718 7193722 ~ 7196355 (+) True CI01000006_07194003_07196123
CI01000006_07167131_07168925.mRNA mRNA upstream 74148 7166778 ~ 7168925 (+) False CI01000006_07167131_07168925
CI01000006_07249033_07250723.mRNA mRNA downstream 416 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07254728_07260352.mRNA mRNA downstream 6239 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07328380_07352585.mRNA mRNA downstream 79961 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07458458_07460310.mRNA mRNA downstream 210091 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07477200_07478617.mRNA mRNA downstream 228906 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
TU50906 other upstream 72539 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1114398 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1133485 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1471298 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 2118924 5117206 ~ 5124149 (+) True G41996
TU51004 other downstream 108330 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 373969 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 635845 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 771320 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 911494 8159516 ~ 8159528 (+) False G45351

Expression Profile