RNA id: CI01000006_07328380_07352585.mRNA



Basic Information


Item Value
RNA id CI01000006_07328380_07352585.mRNA
length 1990
RNA type mRNA
GC content 0.42
exon number 11
gene id CI01000006_07328380_07352585
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7327983 ~ 7353137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAATCAGATCGGGGTATTCCTGCTTCAGTCCTGGACAAAGATGAAGGGACTGAACTGTGATACAGATGTTTCTTATCTCCATGATCGAGCTAATAAACAGTGAGTTGAGCATGCTTTGTGGCAAGACGTTCCATGTATGACTAGACTATGTTTTTAGTGGAGGGAGAGCTTTCCTCTCATTCCGGGTGCTTCCACTGCTATCTGCATTAAAGAGCCGAGGGCTCCAAGTTCAACAAGCCCCCGTGAGGAAAATATTTATTATGGGCTGTGGTTGTGTGATTGACATCATAACATAACATCCTGGATTATGAAGGGGAATATGATGGAATATGGAATGTTGCGGTACTCTTTGAAGTTATGAATTAGAGGCTGCCATGCAACTGTCACCGATCCATGGCGGAGATATTTTTGTTGAACGAAGACAAGCGATTTGGCAAAGGTTTTAAGCTAGCACTAAGGCCTTTTGAAAAACACTTGATGAATATGCATGGCCCTCAAGGTGTTTTAATGGAAACGTCCCTGTTTGTTCCGCAGGCTTCAGGTTTCTGCTATATCAAGTGTGAGTTTTTCTTTCAACAGGAATTACTTTCAGCCCCAGAAGGAGAAGCGATCACTCATAGTCAGCATATTGAAGGGAGGGTGAAGTTTACAGATGGGTGGAATCGATGCCATGAAAAAGTCTTAACCAAGCCTGAGTTGTCAGACCAGGCCAGAGGGATGAGCTCAACTAGTGTGAGCCGAGAGTTTATAGAGATAAAAAGCAGCCGTTTTATCAATGGCCTACACTGCGGCCTCATGGGACCAGACTCCAGACGGAGAGGAGGAAGCCTCTTTTTGCTTGTGGGTGTGGCAGAACAATACAGCACTGTTCCAGGAATATCTGTTTGGGACTTATCCCTTGAGAGTACCTCGATAATGACCGCGCCGCTTGCTGGTGCACGGTGGCTACCCATCAATAACTCCCACATCACGCAGGTTCAGAGAGGGGAGCCAGATGAGCCTCCGGCAGGCGCACATCTGCTTCCCGCTTCTCTGTGGCTGACCCCGCTGACTTTTCATTCTTTATCCATGGCTCCACGAGGAACCTTTAAGGGCCGTGATATGCCAAGCCGACAGTCGAGCTTTTTGATCCAGATGCAGCCGATGCAAGGCGACAACACAGTCGGCTTTCATCGTCACAAGTTCTTTGACACTGGCTTGGAAATCTGGGATCGAATGCTCGCGCACAATGAACACAGAGACGTCCATTTAGTGTGTCACTCAGCTTGTGGTAAAGCTTATTCGGGCTGGTATGCATATCAGGATTATTCCTACAAGGGACTTGCCGACAAAAGATATTATCAGTTCAACAGGGTCGCCAGAGGGGATGGAAATGACATCAGAGTTAAGGCGGACAATAAAAAAGGGGAAGCAGAAATGCCCAGAGGGCCATAGGTACAGCCATAAAAATGGTTTATTTGTTTCCTGAGCACATTTAGTGCTTATGTTTCCATCGGAAGCCTTTATGGCATCGCAATAATATTTATGTACAAGACAGATGGTTTGCTTTGAGTTACAATGGGATCGTATTTCTGTACATGTCTTGTGGTTGCACAATATTCCTCCTGAAAAATTTATCGTTTTTTTTTTTTTTTTTTGGGGATATGATTTCTAATGAAGCCTGTGAATGTAGAGTTATTCATTTTATGGATGAATGGCTGTGGAACATACAGTTTTTAGTTCATTGTATATCACGAAAAATAATTTCAAACAATTGCTTTTGGGAAACAACATATAGATATAAAATGTAGATTTACTGGAATTTATATTATTTCAAAGCAAAAACTAATGCTAGAAAAATTTTACAAAAACACTGTTATAAATAACAAGGTGTTTTAAAGCACATTTAAGCACTAAAATATTCACAAATATACAAAAATGTATCGTAAAATTAGAGTGAATTATTTTTTTACTTGTGTAGCCATAAAACAGCCATTCAAATTCGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50991 lncRNA upstream 2041 7325698 ~ 7325942 (+) True G44859
TU50982 lncRNA upstream 7288 7320374 ~ 7320695 (+) False G44850
TU50981 lncRNA upstream 7288 7320441 ~ 7320695 (+) True G44850
TU50989 lncRNA upstream 7660 7320068 ~ 7320323 (+) True G44857
TU50988 lncRNA upstream 8050 7319715 ~ 7319933 (+) True G44856
TU51272 lncRNA downstream 105257 7460905 ~ 7461020 (+) True G45111
TU51277 lncRNA downstream 119565 7472702 ~ 7472906 (+) True G45116
TU51281 lncRNA downstream 126172 7479309 ~ 7479512 (+) True G45120
TU51283 lncRNA downstream 128552 7481689 ~ 7481888 (+) True G45122
TU51295 lncRNA downstream 168021 7521158 ~ 7522043 (+) True G45134
CI01000006_07254728_07260352.mRNA mRNA upstream 67549 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07249033_07250723.mRNA mRNA upstream 77088 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07243073_07247934.mRNA mRNA upstream 79961 7243073 ~ 7248022 (+) True CI01000006_07243073_07247934
CI01000006_07214841_07222648.mRNA mRNA upstream 105166 7214841 ~ 7222817 (+) True CI01000006_07214841_07222648
CI01000006_07208843_07212249.mRNA mRNA upstream 115145 7208480 ~ 7212838 (+) True CI01000006_07208843_07212249
CI01000006_07458458_07460310.mRNA mRNA downstream 104976 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07477200_07478617.mRNA mRNA downstream 123791 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07486574_07490054.mRNA mRNA downstream 132841 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07492187_07498391.mRNA mRNA downstream 139050 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
CI01000006_07577082_07582303.mRNA mRNA downstream 223261 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
TU50906 other upstream 157449 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1199308 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1218395 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1556208 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 2203834 5117206 ~ 5124149 (+) True G41996
TU51004 other downstream 3215 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 268854 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 530730 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 666205 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 806379 8159516 ~ 8159528 (+) False G45351

Expression Profile