RNA id: CI01000006_07522441_07525197.mRNA


Basic Information

Item Value
RNA id CI01000006_07522441_07525197.mRNA
length 2368
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000006_07522441_07525197
representative False

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7521049 ~ 7525813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAACTGTTAACGCAGCCTTGCAACTCGGGATAGATCTGAACAGATCTGTAAAAGCCGCTCTCCATTATGGGAGAGGAGAGTCTGTCAATCAAGGGCTGAGGAAAGTAATTCATGAGGGTATGACTCAGACAGTTTCTAATAAAAGATCCACCTGAATCAGTAAAGCCACTTTTCTGAAACTAAAATCCCAAAGTTGCATTTCAAAGCAATCAGAACTTCAGAGTTTGATGGGAGATTTAAAGCAGGTGTCCTTAAACCAGGCCTACTTTTGGTAATTGCTTGTCAAGTGACATAGGATGTTCAACACGACAGACTTTCAGGCTGACCGGAGAGAACAGCAGAAAGCTTTTTAGAGAGTGTTAAATGAGTGTAAATAGCGTGGAAGTCTATATCACAACGCAGCATATAACAGATAACATCTGCTCCAGAGCTGAAAAGGGACAAACAAATTAGTCTTCCTCAGGTGGCTTAATTAATTTCACTGACATATAGACTAAAAGTAAATCTTCCACATGTGAAGGGTAAACATTCTTGAAAGTAATATTTCATTCATTAATTTTGCCAATGTTTCTGACAATACATGATATGATGATTCATTCTTGCAATTTACAATAATGAACATGGCATTAGCGATGCGCACTTATTTAATCAAACATCTGCTATCGCTGCAGTCCAAATGCAATTTGTGTCTCAGACACACACAGGGTTATGCGCCAATTTGGCATGCCTTTAAAATTCCGGTTCTGTTTCTAAATTTAAACAGAATTAAGGGAACAGAATTATTTAAAGCAGACGGAGATGAGTTTATTCACCCATGGGGCTGTTCTTTCTTTCTCCTAACTGAACTGTGGTCTCTGATCTGTCATTGCCAACAGCCGGATGAATCTGTCACAGCTCATGTCGCTGAAAAGGGGACTGCCTTCCCGCTCATCATGACCTCCACACACTGTCCCAGCATGCCCTGCAGCACCTGACTGCATCTATGTGCGTTCACAGACACAACATGCATTGTAACTCTGAGGAGGGAACCACATTTCTTTTTGACAAGCGATCCTCTCCTTTAAGGCAATGTTAAATCAAAAATGAAAATTGTGTTATTTACTCACCACTCATTTACAGTTGTCAAACTTGAGTATCTCTTCCATGCGAGGAAAGTGGACGAGGAACAGAAAATGTCAAGCTCCAAAAAGGACAAAAAAAAAAAAAAAAAATTATATATATATATATATATATATATATATATATAAATAGTCCATATGATTTGTATACTATAAAGGTCATTCAGGTTTATATGGGTGAGCAAATGATGTCAAAATATTAATTTATTTGTGAACTATCCCTTTAAAAGCATACAAGGTATCAGTCACTGTAAATAGATTGTTTGGCTCTTGGGATAAACTGCAGTAAATGTCATCATGTAGGCTACTACTATATGGATCATTATAACATTACAGACCCATTTTCTCTCTTTCTGGCTGAATGGATAGATGGATGGAGGTGCTACCACTGGCTGTTCTGGTCAGCGTCACACAGTTATTTTCATCTCCATGTAGACACCAGCCTTTAGCCCAACTACACACTGTCACTAAATATGAGGCCATGCCAACCATGATTAGAGTTAGAGACTTGAGACAACACGTCAGATGCTGATGAGGTCAGCACTAGAGTGTGAATAGACAGGCAGAAAGTCCAGAAGAACGATGACGTGTCATTCGTCACCTCCTCATGCCTCAGGGAACCCATGTCACCCTAGTGTCCTCAAACAAGCCCCTGGCAGCATCTGCTATGGGACCCCTTAACTGTCACACAGCCGATACACAGAGACACAGTTGCTGATTTGTACCAAGGGGGACAAGGCTGACTCAGAGGTGGTTTTTTTTTTTTTTTTTGGGTCATGTCACATGTTCATATCCTCAATTATACGGCATTTGAGTCCTTCTTCAATTGAAGTGGCAAACGAGGCTTTGTAAAATGCTTAAAAAACGGAATAGTCTTTTCTTCCGTAACCCAGTTAAATGGCTTCCCGAACAAATAAAAATGTAGGGCGGGACTTGATTTTGTCCAGTGGGAATTGATAGGATTGTTGTGCTTTGCTATTGGTGTGATTTCATGTGAGTGACAGGTTGTCCTGCCTTTGTACCAATATATATATGAGAAGAGAAGAGAAGTTATCTATTTAAAATTTGTTTAGTCCAATAACTAACTTATGCCTGTGGTGTTACCACTATTTTAGGGGAGAGAGAGGGAGATTGTGACACATGTAATTTAGCAAATGTTATGAAAAATGAATAAGAAAGAAAGAAGTCATCAGATCAACCATCACCTGCAATGACCTTTACACAGAGGAAGTAGGAAATCCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52120 lncRNA downstream 19116 7501585 ~ 7501933 (-) True G45828
TU52095 lncRNA downstream 48073 7472582 ~ 7472976 (-) True G45811
TU51234 lncRNA downstream 115602 7405149 ~ 7405447 (-) True G45078
TU51233 lncRNA downstream 115996 7404784 ~ 7405053 (-) True G45077
TU51211 lncRNA downstream 194458 7326227 ~ 7326591 (-) True CI01000006_07312005_07327873
TU52133 lncRNA upstream 16775 7542588 ~ 7542802 (-) True G45841
TU52140 lncRNA upstream 31251 7557064 ~ 7557299 (-) True G45848
TU52141 lncRNA upstream 32289 7558102 ~ 7558322 (-) True G45849
TU52144 lncRNA upstream 37500 7563313 ~ 7563719 (-) True G45852
TU52147 lncRNA upstream 40060 7565873 ~ 7566073 (-) True G45855
CI01000006_07500281_07507754.mRNA mRNA downstream 13073 7500246 ~ 7507976 (-) False CI01000006_07500281_07507754
CI01000006_07463938_07471236.mRNA mRNA downstream 48587 7463190 ~ 7472462 (-) True CI01000006_07463938_07471236
CI01000006_07456715_07457332.mRNA mRNA downstream 63670 7456463 ~ 7457379 (-) True CI01000006_07456715_07457332
CI01000006_07449425_07454936.mRNA mRNA downstream 65743 7449425 ~ 7455306 (-) True CI01000006_07449425_07454936
CI01000006_07444688_07448103.mRNA mRNA downstream 72946 7444589 ~ 7448103 (-) True CI01000006_07444688_07448103
CI01000006_07586562_07627355.mRNA mRNA upstream 59209 7585022 ~ 7628448 (-) True CI01000006_07586562_07627355
CI01000006_07636757_07648169.mRNA mRNA upstream 110880 7636693 ~ 7649325 (-) True CI01000006_07636757_07648169
CI01000006_07658119_07685010.mRNA mRNA upstream 131355 7657168 ~ 7686169 (-) True CI01000006_07658119_07685010
CI01000006_07731668_07752706.mRNA mRNA upstream 205847 7731660 ~ 7754105 (-) True CI01000006_07731668_07752706
CI01000006_07836338_07852081.mRNA mRNA upstream 309805 7835618 ~ 7852081 (-) True CI01000006_07836338_07852081
TU52113 other downstream 10093 7510829 ~ 7510956 (-) True G45821
TU51020 other downstream 544177 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other downstream 544177 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51019 other downstream 544177 6974016 ~ 6976872 (-) True CI01000006_06974359_06976736
TU49494 other downstream 2958981 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU53918 other upstream 2957043 10488238 ~ 10488435 (-) True G47397
TU54208 other upstream 3505098 11030911 ~ 11033127 (-) True G47658
TU54279 other upstream 4124550 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 4808596 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 4820379 12346192 ~ 12346649 (-) False G48451

Expression Profile